tseemann barrnap issues

tseemann / barrnap

:microscope: :leo: Bacterial ribosomal RNA predictor

GNU General Public License v3.0

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issues

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Bug getfasta with --outseq

#68 johanzi opened 5 months ago
0
update DBs using RFAM 15.9 & SILVA 138.1

#67 mr-c opened 9 months ago
1
Error: Invalid alphabet type in target for nhmmer.

#66 theo-allnutt-bioinformatics opened 1 year ago
0
SILVA version?

#65 Unaimend opened 1 year ago
1
Barrnap (nhmmer) takes an eternity to run

#64 erzakiev closed 1 year ago
1
Building eukaryotic rrna operon database

#63 DeniRibicic opened 2 years ago
0
barrnap

#62 473021677 opened 2 years ago
0
barrnap doesn't create any output

#61 neelam19051 opened 2 years ago
0
Fail if Bedtools issues a fasta normalization error

#60 jdwinkler-lanzatech opened 2 years ago
0
barrnap-v0.9 debian package has incomplete database

#59 thackl opened 2 years ago
2
please add option to force overwrite .fai index during, or automatically delete fai file after barrnap run

#58 jvollme opened 3 years ago
0
calling two overlapping sequences separate partial 16S sequences

#57 ileleiwi opened 3 years ago
0
issue with rrna.fa writing and bed tools

#56 anbazhagan6 closed 1 year ago
2
[barrnap] ERROR: nhmmer failed to run

#55 nick-youngblut opened 3 years ago
3
nhmmer failed to run - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA

#54 minjinhan opened 3 years ago
6
GFF output and Fasta-headers give different start-coordinates of rRNA-genes

#53 jvollme opened 3 years ago
0
Cannot specify a file on cmdline?

#52 wwood opened 3 years ago
0
updates to silva 138 (with license info)

#51 bwlang opened 3 years ago
0
silva switched to cc4

#50 bwlang closed 3 years ago
0
tweak for new license

#49 bwlang closed 3 years ago
0
Adding fungal HMM

#48 danwiththeplan opened 3 years ago
4
Overlapping 5.8S and 28S annotations in Eukaryotic rDNAs

#47 BartvdVossenberg opened 3 years ago
4
possible option for "prokaryotic" search (archaeal + procaryotic)?

#46 jvollme opened 3 years ago
0
Could the barrnap be used to predict the rrna of *.fna.gz file?

#45 YulinzhangSia opened 3 years ago
1
Can not find required 'nhmmer'

#44 Lcornet opened 3 years ago
1
What does column 8 stand for?

#43 roey-angel opened 3 years ago
0
[Syntax error] Outseq argument

#42 mirajaonison closed 3 years ago
0
can barrnap-0.9 use hmmer/3.3

#41 EricDeveaud closed 4 years ago
2
Question about using barrnap on reads

#40 jolespin closed 4 years ago
4
Add --slow/--accurate mode that uses RFAM/Infernal

#39 tseemann opened 4 years ago
0
Error: Cannot write foo.fa.fai index

#38 tseemann opened 4 years ago
0
Fasta file and GFF have shifted start of 16S

#37 sleyn closed 4 years ago
2
Mycobacteria & 5S rRNA

#36 ppgardne opened 5 years ago
0
archaea and bacteria 16S duplicate

#35 chloelulu opened 5 years ago
1
Check versions of bedtools is >= 2.27

#34 tseemann opened 5 years ago
1
Uncorrect bedtools flag name fixed

#33 mariafiruleva closed 5 years ago
3
minor doc typo on main README.md

#32 jfass closed 5 years ago
1
fix bedtools call so --outseq works

#31 JamesRH opened 6 years ago
0
-outseq parameter

#30 FabyanoLopes closed 5 years ago
1
Typo in bedtools command breaks 0.9

#29 kes1smmn closed 6 years ago
4
ECCN for BARRNAP version 0

#28 kbhatna1 closed 6 years ago
1
Line 170 "+" after -name flag

#27 kkapuria3 closed 6 years ago
1
Please create new release

#26 snayfach closed 6 years ago
1
Add TRAVIS-CI support

#25 tseemann closed 6 years ago
0
--help returns 1

#24 tseemann closed 6 years ago
0
Concatenating all .hmm for a "meta" search?

#23 bachev closed 6 years ago
2
Identical results with --kingdom bac arc and euk

#22 snayfach closed 5 years ago
1
Default # of cores leads to OOM reaping on Linux

#21 taltman closed 6 years ago
1
Barrnap 0.8 issues with 18S sequences

#20 tseemann closed 6 years ago
2
Get rid of Time::Piece

#19 tseemann closed 6 years ago
0