tseemann / prokka

:zap: :aquarius: Rapid prokaryotic genome annotation
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Does the manual stop affect the results that have been generated? #516

Open PhoebeCc opened 4 years ago

PhoebeCc commented 4 years ago

Hello~ I run prokka as follow:

time prokka result/megahit/xtw.contigs.fa --outdir temp/prokka \ --prefix xtw --metagenome --force --cpus 0 \ --mincontiglen 500 --norrna --notrna --fast

about 1hour , results of .gff .fna .faa .fnn .fsa .tbl .log .txt .tsv have bene generated. but to generate .err result, it took so many times.

tbl2asn -V b -a r10k -l paired-ends -M b -N 1 -y 'Annotated using prokka 1.14.6 from https://github.com/tseemann/prokka' -Z temp\/prokka\/cww.err -i temp\/prokka\/cww.fsa 2> /dev/null

The only result i care is .fnn, To save computing time and resources, Can I just stop the run before it ends, and Does the manual stop affect the results that have been generated?