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tseemann / prokka

:zap: :aquarius: Rapid prokaryotic genome annotation
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how to update blastp? #547

Closed zhuanghemu closed 3 years ago

zhuanghemu commented 3 years ago

Hi how can i update blastp? [14:48:02] Looking for 'blastp' - found /root/miniconda3/envs/snippy/bin/blastp [14:48:03] Determined blastp version is 002007 from 'blastp: 2.7.1+' [14:48:03] Prokka needs blastp 2.8 or higher. Please upgrade and try again.

drelo commented 3 years ago

I left a possible workaround here. I hope it helps https://github.com/tseemann/prokka/issues/549#issuecomment-764611154

rpetit3 commented 3 years ago

@zhuanghemu

Bit late, I might be wrong but it looks like you have Prokka in a Snippy environment.

You can try 

conda activate snippy
conda update -c conda-frorge -c bioconda blast prokka

Or easier, would be to create a Prokka environment.

conda ccreate -n prokka -c conda-forge -c bioconda prokka
zhuanghemu commented 3 years ago

@zhuanghemu

Bit late, I might be wrong but it looks like you have Prokka in a Snippy environment.

You can try

conda activate snippy
conda update -c conda-frorge -c bioconda blast prokka

Or easier, would be to create a Prokka environment.

conda ccreate -n prokka -c conda-forge -c bioconda prokka

Thanks, it works.

andersgs commented 3 years ago

Thank you @rpetit3