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tseemann / prokka

:zap: :aquarius: Rapid prokaryotic genome annotation
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blastp version issue #549

Closed Ankita-1211 closed 3 years ago

Ankita-1211 commented 3 years ago

Please Help !

Looking for 'blastp' - found /home/anaconda3/bin/blastp Determined blastp version is 2.10 Prokka needs blastp 2.2 or higher. Please upgrade and try again.

drelo commented 3 years ago

https://github.com/tseemann/prokka/issues/544

drelo commented 3 years ago

Assuming you are using conda I am no expert but I think I just managed to fix this error with this workaround. I just installed another version of blast and re installed prokka and other missing packages I hope it helps

conda remove blast 
conda install -c bioconda blast=2.9.0
conda install -c conda-forge -c bioconda -c defaults prokka
conda install -c bioconda hmmer
sudo cpanm Bio::SearchIO::hmmer3 # normally this would work OUTSIDE conda
which perl # locate where is perl inside your environment
~/anaconda3/envs/myenv/bin/cpanm Bio::SearchIO::hmmer3 # use this cpanm
Ankita-1211 commented 3 years ago

Thank you @drelo . It worked

Ran into another problem Could not run command: tbl2asn. But will resolve, saw some closed issues related to it.

chenyibee233 commented 11 months ago

Hi @Ankita-1211 did you solve the tbl2asn problem? I met the same problem, and also need help