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twlab
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TEProf2Paper
TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
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New Gencode Version
#18
mpizzagalli777
closed
3 months ago
2
How to filter the GTEX normal samples?
#17
songlyzz
opened
3 months ago
1
How to filter the GTEX normal sample？
#16
songlyzz
closed
3 months ago
0
How to visualize the candidate TE-gene transcripts
#15
Ting-PKU
closed
2 months ago
2
Step 11: how to design treatment group versus control
#14
songlyzz
closed
2 months ago
1
Exonization of TE
#13
bshim181
closed
2 months ago
2
Test data for verification purposes?
#12
WesleyRosales
closed
7 months ago
1
rmskhg38_annotate_gtf_update_test_tpm.py ValueError: invalid literal for int() with base 10: '1,transcript_id'
#11
songlyzz
closed
8 months ago
3
How to get raw reads counts for final all TE-chimeric transcripts in different samples?
#10
31474molly
closed
8 months ago
2
Inconsistent script naming in usage guide of readme.md
#9
gawxyz
opened
1 year ago
0
UnsatisfiableError during conda installation
#8
ChristianRohde
closed
1 year ago
3
no '.stats' out put in step5--Calculate Read Information
#7
mechealeth
closed
1 year ago
2
Reproducing results for 5'CAGE data
#6
nannabarnkob
opened
1 year ago
1
Remove dependency on Xmisc
#5
nakul2234
opened
1 year ago
0
Add Excel file output after Step 10
#4
nakul2234
opened
1 year ago
0
no out_put in rmskhg38_annotate_gtf_update_test_tpm.py process
#3
mechealeth
closed
1 year ago
3
Applied to Long-read Sequencing Data
#2
Edison19991109
closed
1 year ago
16
All reads (read, startread, endread) were 0 after calculating read information at Step 5
#1
ptnaimelmm
closed
1 year ago
3