problem of multiqc

[xlhu66]

First of all, thank for your nice pipeline.

Recently, I got an error in the part of multiqc analylsis, the codes showing below:

MissingOutputException in line 377 of /home/xiaoli/31_snakemake/cisDynet_snakemake-main/atacqc/cisDynet_snakemake.py: Job Missing files after 2000 seconds: multiqc/multiqc_report.html This might be due to filesystem latency. If that is the case, consider to increase the wait time with --latency-wait. Job id: 0 completed successfully, but some output files are missing. 0 File "/home/xiaoli/miniconda3/envs/cisDynet_pipeline/lib/python3.8/site-packages/snakemake/executors/init.py", line 583, in handle_job_success File "/home/xiaoli/miniconda3/envs/cisDynet_pipeline/lib/python3.8/site-packages/snakemake/executors/init.py", line 252, in handle_job_success Exiting because a job execution failed. Look above for error message ####################################################################################

I am trying to figure out if increasing the wait time can solve it, so I used:

snakemake -s cisDynet_snakemake.py -j 30 --latency-wait 2000

But in vain.

I appreciate any suggestions for this problem.

[tzhu-bio]

I thinks this due to multiqc error, you can try running the following code:

multiqc ./ -o multiqc -f -e general_stats -c atacqc/multiqc_config.txt

[xlhu66]

I thinks this due to multiqc error, you can try running the following code:

multiqc ./ -o multiqc -f -e general_stats -c atacqc/multiqc_config.txt

Thanks, it works right now.