uclahs-cds / package-moPepGen

Multi-Omics Peptide Generator
https://uclahs-cds.github.io/package-moPepGen/
GNU General Public License v2.0
6 stars 1 forks source link

Fuzz test & Fix callVariant #792

Closed zhuchcn closed 1 year ago

zhuchcn commented 1 year ago

Description

Update fuzz test history. 63'742 finished with all match.

I'm now running fuzz test on a F32 with 28 threads, but still it always fails after a while because OOM. The memory usage may get spiked for certain cases, and if multiple fuzz test case running simultaneously all need high memory, it may just fail. No plan to fix this so I'll just let it run and fail and update the history log along the way.

Closes #798

Checklist

lydiayliu commented 1 year ago

That's like single fuzztests requiring more than ~2-3G of memory? Wouldn't be unheard of, I've seen graph memory usage climb to 15G above baseline of loading reference files XD

zhuchcn commented 1 year ago

Yeah it does seem a little high. It could also be bruteForce that is using a lot of memory. bruteForoce is very slow for sure.