Variant IDs for circRNAs are changed to use the backsplicing site gene coordinates instead of listing all exons or introns. Backsplicing sites in genomic coordinates are also stored in GVF files for easy use.
Closes #878
Checklist
[X] This PR does NOT contain PHI or germline genetic data. A repo may need to be deleted if such data is uploaded. Disclosing PHI is a major problem.
[X] This PR does NOT contain molecular files, compressed files, output files such as images (e.g..png, .jpeg), .pdf, .RData, .xlsx, .doc, .ppt, or other non-plain-text files. To automatically exclude such files using a .gitignore file, see here for example.
[X] The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].
[X] I have added the major changes included in this pull request to the CHANGELOG.md under the next release version or unreleased, and updated the date.
Description
Variant IDs for circRNAs are changed to use the backsplicing site gene coordinates instead of listing all exons or introns. Backsplicing sites in genomic coordinates are also stored in GVF files for easy use.
Closes #878
Checklist
.png, .jpeg),.pdf,.RData,.xlsx,.doc,.ppt, or other non-plain-text files. To automatically exclude such files using a .gitignore file, see here for example.CHANGELOG.mdunder the next release version or unreleased, and updated the date.