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uclahs-cds / pipeline-call-NonCanonicalPeptide

Nextflow pipeline to call non-canonical peptides as custom databases for proteogenomic analysis
https://automatic-adventure-o4l96o9.pages.github.io/
GNU General Public License v2.0
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Complex filtering #61

Open lydiayliu opened 2 years ago

lydiayliu commented 2 years ago

Seems like the pipeline logic is a little off for merge. Btw, do we want to implement this logic in the pipeline?

https://crispy-invention-072327aa.pages.github.io/filter-fasta/#complex-filtering

Originally posted by @zhuchcn in https://github.com/uclahs-cds/pipeline-call-NonCanonicalPeptide/issues/60#issuecomment-1144016132

zhuchcn commented 2 years ago

I suppose we can add the complex filtering as a bucket list, I don't really see any urgent use for it yet!

The merge logic is more important for me right now XD

Sounds good. This is likely to be a separate nextflow workflow module anyway.