uclahs-cds / pipeline-call-sSNV

A Nextflow pipeline to identify the somatic single nucleotide variants (sSNVs) by comparing a pair of tumor/normal samples.
https://uclahs-cds.github.io/pipeline-call-sSNV/
GNU General Public License v2.0
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Add new standard pipeline workflows #275

Closed nwiltsie closed 8 months ago

nwiltsie commented 8 months ago

Description

This adds two new standard workflows to this pipeline:

  1. The new Nextflow configuration regression test Action from https://github.com/uclahs-cds/tool-Nextflow-action/pull/16. I've also added one regression test (copied from the NFTest cases). I make no claims that the output configuration is what is intended, but it is at least what is output given the current inputs.
  2. The new documentation Action from https://github.com/uclahs-cds/tool-Nextflow-action/pull/13.

For the documentation workflow, nothing should happen until this PR is merged, and then the documentation should be updated automatically on every update to main and every tag creation. After that is done I will go back and backfill docs for the existing releases.

Checklist