Unfortunately, due to some of the additional safety checks, these workflows specifically cannot be tested in a pull request - they will only function once merged to main. As the workflow is currently disabled (#281), merging this should be innocuous.
[x] The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].
[x] I have set up or verified the branch protection rule following the github standards before opening this pull request.
[x] I have added my name to the contributors listings in the manifest block in the nextflow.config as part of this pull request; I am listed already, or do not wish to be listed. (This acknowledgement is optional.)
[x] I have added the changes included in this pull request to the CHANGELOG.md under the next release version or unreleased, and updated the date.
[ ] I have updated the version number in the metadata.yaml and manifest block of the nextflow.config file following semver, or the version number has already been updated. (Leave it unchecked if you are unsure about new version number and discuss it with the infrastructure team in this PR.)
[ ] I have tested the pipeline on at least one A-mini sample.
Description
This incorporates the new testing workflows implemented in https://github.com/uclahs-cds/tool-Nextflow-action/pull/33.
Unfortunately, due to some of the additional safety checks, these workflows specifically cannot be tested in a pull request - they will only function once merged to
main. As the workflow is currently disabled (#281), merging this should be innocuous.Closes #...
Checklist
[x] I have read the code review guidelines and the code review best practice on GitHub check-list.
[x] I have reviewed the Nextflow pipeline standards.
[x] The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].
[x] I have set up or verified the branch protection rule following the github standards before opening this pull request.
[x] I have added my name to the contributors listings in the
manifestblock in thenextflow.configas part of this pull request; I am listed already, or do not wish to be listed. (This acknowledgement is optional.)[x] I have added the changes included in this pull request to the
CHANGELOG.mdunder the next release version or unreleased, and updated the date.[ ] I have updated the version number in the
metadata.yamlandmanifestblock of thenextflow.configfile following semver, or the version number has already been updated. (Leave it unchecked if you are unsure about new version number and discuss it with the infrastructure team in this PR.)[ ] I have tested the pipeline on at least one A-mini sample.