Update contamination table instructions in README

uclahs-cds / pipeline-call-sSNV

A Nextflow pipeline to identify the somatic single nucleotide variants (sSNVs) by comparing a pair of tumor/normal samples.

https://uclahs-cds.github.io/pipeline-call-sSNV/

GNU General Public License v2.0

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Update contamination table instructions in README #286

Open sorelfitzgibbon opened 6 months ago

sorelfitzgibbon commented 6 months ago

Update instructions to reflect newer location of contamination table output (moved from call-gSNP to recalibrate-BAM), and to suggest which contamination file to use (*_with-matched-normal.table).