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uclahs-cds / pipeline-call-sSNV

A Nextflow pipeline to identify the somatic single nucleotide variants (sSNVs) by comparing a pair of tumor/normal samples.
https://uclahs-cds.github.io/pipeline-call-sSNV/
GNU General Public License v2.0
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Bump the pipeline-submodules group across 1 directory with 2 updates #306

Closed dependabot[bot] closed 2 months ago

dependabot[bot] commented 4 months ago

Bumps the pipeline-submodules group with 2 updates in the / directory: external/pipeline-Nextflow-config and external/pipeline-Nextflow-module.

Updates external/pipeline-Nextflow-config from be1eaf5 to a4e99e0

Commits
  • a4e99e0 Merge pull request #68 from uclahs-cds/yashpatel-generalize-type-name
  • 3b32ea9 Merge branch 'main' into yashpatel-generalize-type-name
  • 2127286 Merge pull request #69 from uclahs-cds/nwiltsie-allow-gstring-path
  • 964e0b9 Fix bug with warning message
  • d16e781 Allow Path schema type to be a GString
  • 49eb3e7 Add comma
  • 1a01640 Add generic type for readable file list
  • 07f0657 Update CHANGELOG
  • 467c92b Rename readable file list function to be more general
  • See full diff in compare view


Updates external/pipeline-Nextflow-module from ef40c10 to 1cfa9fa

Commits
  • 1cfa9fa Merge pull request #45 from uclahs-cds/kpash-update-indexfile-with-cram
  • 0115f96 style changes
  • 3021ddf Update modules/common/indexFile/main.nf
  • 251a226 Update modules/common/indexFile/main.nf
  • 428529b add @​kiarod to metadata.yaml
  • 80a8027 Update indexFile to support cram file format
  • 537da32 Merge pull request #44 from uclahs-cds/nwiltsie-pipeval-with-metadata
  • c462931 Support new pipeval entrypoint
  • 12bd361 Merge branch 'main' into nwiltsie-pipeval-with-metadata
  • c785ee5 Change PipeVal command because the interface was changed (#43)
  • Additional commits viewable in compare view


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dependabot[bot] commented 2 months ago

Superseded by #309.