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uf-hobi-informatics-lab / UTH-omoponfhir-main-v54-r4

OMOP v5.4 on FHIR R4 with SQL Render - GUI Server
Apache License 2.0
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build amd64 architecture omoponfhir and export as tar file load to gpu server #5

Open huyuaaaray opened 2 weeks ago

huyuaaaray commented 2 weeks ago

loaded in hpg: Image

Build both M1 architecture and AMD OMOPONFHIR docker image and container. And I have already verify that both of them can successfully run in my laptop after loading with exported docker image. PS: the original provided dockerfile has issues of dependency image pulling. We need to manually select the compatible image version and manually pull them.

huyuaaaray commented 2 weeks ago

opying blob 6cd3d0692788 done | Copying blob c07546735c9c done | Copying blob 6cca1915825a done | Copying blob ade8420cddb8 done | Copying blob a181ae305210 done | Copying blob a46a5fb872b5 done | Copying blob 5f70bf18a086 done | Copying blob 95c413e1f863 done | Copying blob 5f70bf18a086 done | Copying blob 712287b3d761 done | Copying blob b870758d7def done | Copying config 9ad6f96cad done | Writing manifest to image destination 2024/11/07 21:17:23 info unpack layer: sha256:f8ff0a0c2bda2f7e7444c69339412f10a13afea376dc613c54517bcd66542d21 2024/11/07 21:17:24 info unpack layer: sha256:0562ac2ffd4aa9a6fb1739b3c0c861aab766011ca9daf6ce479c8248d9dba1da 2024/11/07 21:17:24 info unpack layer: sha256:97899323d450d09a02407aa4eb0654cae0738d7eeb327a1b71716710b4d81e9b 2024/11/07 21:17:27 info unpack layer: sha256:90c33b1cf0a5808337c9ab37d0457c9757b6bf79d6f47d5363d28dbe3053c28c 2024/11/07 21:17:27 info unpack layer: sha256:2db9f628c5a9dccd7f874fd6e09defabef996859ecd0fb7e3d69f9b8f6f30050 2024/11/07 21:17:27 info unpack layer: sha256:10257ceebc5ee9647099ee910a69b7ded02566636b1c2072ac43b692a1e95e86 2024/11/07 21:17:27 info unpack layer: sha256:bd9ddc54bea929a22b334e73e026d4136e5b73f5cc29942896c72e4ece69b13d 2024/11/07 21:17:27 info unpack layer: sha256:8e5927f69fa6ea1040b29b09b6cddee15794dc86ece0c79c9e0444e7c4549e98 2024/11/07 21:17:27 info unpack layer: sha256:bd9ddc54bea929a22b334e73e026d4136e5b73f5cc29942896c72e4ece69b13d 2024/11/07 21:17:27 info unpack layer: sha256:5ab78ec717902fa14df8d27695dd40e7d5a7b78bfc87e912b2dfd8c84dc685c4 2024/11/07 21:17:28 info unpack layer: sha256:fbee6c9d15dd1444c4a54749ec90ef7243a35e0844b471b25bab3b3e347d45ef INFO: Creating SIF file... INFO: Build complete: omoponfhir_image.sif [yu.hu@c0900a-s11 huyu]$ apptainer run omoponfhir_image.sif Using CATALINA_BASE: /usr/local/tomcat Using CATALINA_HOME: /usr/local/tomcat Using CATALINA_TMPDIR: /usr/local/tomcat/temp Using JRE_HOME: /opt/java/openjdk Using CLASSPATH: /usr/local/tomcat/bin/bootstrap.jar:/usr/local/tomcat/bin/tomcat-juli.jar Using CATALINA_OPTS:
08-Nov-2024 02:18:06.602 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name: Apache Tomcat/11.0.0 08-Nov-2024 02:18:06.609 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Oct 3 2024 17:00:16 UTC 08-Nov-2024 02:18:06.609 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 11.0.0.0 08-Nov-2024 02:18:06.609 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux 08-Nov-2024 02:18:06.609 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.18.0-513.24.1.el8_9.x86_64 08-Nov-2024 02:18:06.610 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64 08-Nov-2024 02:18:06.610 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /opt/java/openjdk 08-Nov-2024 02:18:06.610 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 21.0.5+11-LTS 08-Nov-2024 02:18:06.610 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Eclipse Adoptium 08-Nov-2024 02:18:06.610 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /usr/local/tomcat 08-Nov-2024 02:18:06.610 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /usr/local/tomcat java.util.logging.ErrorManager: 4 java.io.FileNotFoundException: /usr/local/tomcat/logs/catalina.2024-11-08.log (Read-only file system) at java.base/java.io.FileOutputStream.open0(Native Method) at java.base/java.io.FileOutputStream.open(FileOutputStream.java:289) at java.base/java.io.FileOutputStream.(FileOutputStream.java:230) at org.apache.juli.FileHandler.openWriter(FileHandler.java:445) at org.apache.juli.FileHandler.publish(FileHandler.java:221) at org.apache.juli.AsyncFileHandler.publishInternal(AsyncFileHandler.java:138) at org.apache.juli.AsyncFileHandler$1.run(AsyncFileHandler.java:131) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642) at java.base/java.lang.Thread.run(Thread.java:1583) 08-Nov-2024 02:18:06.625 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/usr/local/tomcat/conf/logging.properties 08-Nov-2024 02:18:06.625 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager 08-Nov-2024 02:18:06.625 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048 08-Nov-2024 02:18:06.625 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027 08-Nov-2024 02:18:06.625 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED 08-Nov-2024 02:18:06.625 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED 08-Nov-2024 02:18:06.625 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.util=ALL-UNNAMED 08-Nov-2024 02:18:06.625 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.util.concurrent=ALL-UNNAMED 08-Nov-2024 02:18:06.625 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED 08-Nov-2024 02:18:06.626 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --enable-native-access=ALL-UNNAMED 08-Nov-2024 02:18:06.626 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/usr/local/tomcat 08-Nov-2024 02:18:06.626 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/usr/local/tomcat 08-Nov-2024 02:18:06.626 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/usr/local/tomcat/temp 08-Nov-2024 02:18:06.639 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent Loaded Apache Tomcat Native library [2.0.8] using APR version [1.7.2]. 08-Nov-2024 02:18:06.654 INFO [main] org.apache.catalina.core.AprLifecycleListener.initializeSSL OpenSSL successfully initialized [OpenSSL 3.0.13 30 Jan 2024] 08-Nov-2024 02:18:06.918 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"] 08-Nov-2024 02:18:06.944 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [517] milliseconds 08-Nov-2024 02:18:06.980 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina] 08-Nov-2024 02:18:06.980 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/11.0.0] 08-Nov-2024 02:18:06.985 SEVERE [main] org.apache.catalina.valves.AccessLogValve.open Failed to open access log file [/usr/local/tomcat/logs/localhost_access_log.2024-11-08.txt] Note: running as user [yu.hu] java.io.FileNotFoundException: /usr/local/tomcat/logs/localhost_access_log.2024-11-08.txt (Read-only file system) at java.base/java.io.FileOutputStream.open0(Native Method) at java.base/java.io.FileOutputStream.open(FileOutputStream.java:289) at java.base/java.io.FileOutputStream.(FileOutputStream.java:230) at org.apache.catalina.valves.AccessLogValve.open(AccessLogValve.java:623) at org.apache.catalina.valves.AccessLogValve.startInternal(AccessLogValve.java:657) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.StandardPipeline.startInternal(StandardPipeline.java:157) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:740) at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:771) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1170) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1160) at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:145) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:716) at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:203) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.StandardService.startInternal(StandardService.java:415) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:866) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.startup.Catalina.start(Catalina.java:755) at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103) at java.base/java.lang.reflect.Method.invoke(Method.java:580) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:342) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:470) 08-Nov-2024 02:18:06.995 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/usr/local/tomcat/webapps/ROOT.war] 08-Nov-2024 02:18:11.541 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. java.util.logging.ErrorManager: 4 java.io.FileNotFoundException: /usr/local/tomcat/logs/localhost.2024-11-08.log (Read-only file system) at java.base/java.io.FileOutputStream.open0(Native Method) at java.base/java.io.FileOutputStream.open(FileOutputStream.java:289) at java.base/java.io.FileOutputStream.(FileOutputStream.java:230) at org.apache.juli.FileHandler.openWriter(FileHandler.java:445) at org.apache.juli.FileHandler.publish(FileHandler.java:221) at org.apache.juli.AsyncFileHandler.publishInternal(AsyncFileHandler.java:138) at org.apache.juli.AsyncFileHandler$1.run(AsyncFileHandler.java:131) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642) at java.base/java.lang.Thread.run(Thread.java:1583) 2024-11-08 02:18:11.695 [main] INFO o.s.web.context.ContextLoader [ContextLoader.java:255] Root WebApplicationContext: initialization started 2024-11-08 02:18:11.732 [main] DEBUG o.s.w.c.s.AnnotationConfigWebApplicationContext [AbstractApplicationContext.java:671] Refreshing Root WebApplicationContext 2024-11-08 02:18:11.828 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.context.annotation.internalConfigurationAnnotationProcessor' 2024-11-08 02:18:11.875 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/ConditionOccurrenceServiceImp.class] 2024-11-08 02:18:11.876 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/FCacheServiceImp.class] 2024-11-08 02:18:11.877 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/FPersonServiceImp.class] 2024-11-08 02:18:11.878 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/SpecimenServiceImp.class] 2024-11-08 02:18:11.878 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/ProcedureOccurrenceServiceImp.class] 2024-11-08 02:18:11.878 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/ConceptRelationshipServiceImp.class] 2024-11-08 02:18:11.879 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/FactRelationshipServiceImp.class] 2024-11-08 02:18:11.879 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/TransactionServiceImp.class] 2024-11-08 02:18:11.880 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/VisitOccurrenceServiceImp.class] 2024-11-08 02:18:11.881 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/RelationshipServiceImp.class] 2024-11-08 02:18:11.881 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/DeathServiceImp.class] 2024-11-08 02:18:11.882 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/DrugExposureServiceImp.class] 2024-11-08 02:18:11.882 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/ObservationServiceImp.class] 2024-11-08 02:18:11.882 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/CareSiteServiceImp.class] 2024-11-08 02:18:11.883 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/FObservationViewServiceImp.class] 2024-11-08 02:18:11.883 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/LocationServiceImp.class] 2024-11-08 02:18:11.883 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/NoteServiceImp.class] 2024-11-08 02:18:11.884 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/FImmunizationViewServiceImp.class] 2024-11-08 02:18:11.884 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/ProviderServiceImp.class] 2024-11-08 02:18:11.884 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/MeasurementServiceImp.class] 2024-11-08 02:18:11.885 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/ConceptServiceImp.class] 2024-11-08 02:18:11.885 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/VocabularyServiceImp.class] 2024-11-08 02:18:11.886 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/service/DeviceExposureServiceImp.class] 2024-11-08 02:18:11.910 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: file [/usr/local/tomcat/webapps/ROOT/WEB-INF/classes/edu/gatech/chai/omoponfhir/smart/dao/JwkSetImpl.class] 2024-11-08 02:18:11.910 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: file [/usr/local/tomcat/webapps/ROOT/WEB-INF/classes/edu/gatech/chai/omoponfhir/smart/dao/SmartOnFhirAppImpl.class] 2024-11-08 02:18:11.910 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: file [/usr/local/tomcat/webapps/ROOT/WEB-INF/classes/edu/gatech/chai/omoponfhir/smart/dao/SmartOnFhirSessionImpl.class] 2024-11-08 02:18:11.917 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-r4-mapping-1.6.1.jar!/edu/gatech/chai/omoponfhir/local/task/ScheduledTask.class] 2024-11-08 02:18:11.919 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-sql-1.6.5.jar!/edu/gatech/chai/omopv5/dba/task/CachingTask.class] 2024-11-08 02:18:11.924 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: file [/usr/local/tomcat/webapps/ROOT/WEB-INF/classes/edu/gatech/chai/omoponfhir/config/FhirTesterConfig.class] 2024-11-08 02:18:11.926 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: file [/usr/local/tomcat/webapps/ROOT/WEB-INF/classes/edu/gatech/chai/omoponfhir/config/SmartServerConfig.class] 2024-11-08 02:18:11.939 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: file [/usr/local/tomcat/webapps/ROOT/WEB-INF/classes/ca/uhn/fhir/to/Controller.class] 2024-11-08 02:18:11.956 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: file [/usr/local/tomcat/webapps/ROOT/WEB-INF/classes/edu/gatech/chai/omoponfhir/smart/servlet/SmartAuthServicesController.class] 2024-11-08 02:18:11.962 [main] DEBUG o.s.c.a.ClassPathBeanDefinitionScanner [ClassPathScanningCandidateComponentProvider.java:476] Identified candidate component class: URL [jar:file:/usr/local/tomcat/webapps/ROOT/WEB-INF/lib/omoponfhir-omopv5-r4-mapping-1.6.1.jar!/edu/gatech/chai/omoponfhir/omopv5/r4/utilities/ConfigValues.class] 2024-11-08 02:18:11.987 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultListableBeanFactory.java:1029] Overriding bean definition for bean 'viewResolver' with a different definition: replacing [Root bean: class [null]; scope=; abstract=false; lazyInit=null; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=ca.uhn.fhir.to.FhirTesterMvcConfig; factoryMethodName=viewResolver; initMethodNames=null; destroyMethodNames=[(inferred)]; defined in class path resource [ca/uhn/fhir/to/FhirTesterMvcConfig.class]] with [Root bean: class [null]; scope=; abstract=false; lazyInit=null; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=smartServerConfig; factoryMethodName=viewResolver; initMethodNames=null; destroyMethodNames=[(inferred)]; defined in class path resource [edu/gatech/chai/omoponfhir/config/SmartServerConfig.class]] 2024-11-08 02:18:12.143 [main] DEBUG o.s.b.f.xml.XmlBeanDefinitionReader [XmlBeanDefinitionReader.java:402] Loaded 3 bean definitions from class path resource [database-config.xml] 2024-11-08 02:18:12.295 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.context.support.PropertySourcesPlaceholderConfigurer#0' 2024-11-08 02:18:12.315 [main] DEBUG o.springframework.jndi.JndiTemplate [JndiTemplate.java:155] Looking up JNDI object with name [java:comp/env/jdbc.datasourcename] 2024-11-08 02:18:12.316 [main] DEBUG o.s.jndi.JndiLocatorDelegate [JndiLocatorSupport.java:102] Converted JNDI name [java:comp/env/jdbc.datasourcename] not found - trying original name [jdbc.datasourcename]. javax.naming.NameNotFoundException: Name [jdbc.datasourcename] is not bound in this Context. Unable to find [jdbc.datasourcename]. 2024-11-08 02:18:12.316 [main] DEBUG o.springframework.jndi.JndiTemplate [JndiTemplate.java:155] Looking up JNDI object with name [jdbc.datasourcename] 2024-11-08 02:18:12.317 [main] DEBUG o.s.jndi.JndiPropertySource [JndiPropertySource.java:101] JNDI lookup for name [jdbc.datasourcename] threw NamingException with message: Name [jdbc.datasourcename] is not bound in this Context. Unable to find [jdbc.datasourcename].. Returning null. 2024-11-08 02:18:12.317 [main] DEBUG o.s.c.e.SystemEnvironmentPropertySource [SystemEnvironmentPropertySource.java:95] PropertySource 'systemEnvironment' does not contain property 'jdbc.datasourcename', but found equivalent 'JDBC_DATASOURCENAME' 2024-11-08 02:18:12.317 [main] DEBUG o.s.c.e.PropertySourcesPropertyResolver [PropertySourcesPropertyResolver.java:115] Found key 'jdbc.datasourcename' in PropertySource 'systemEnvironment' with value of type String 2024-11-08 02:18:12.317 [main] DEBUG o.s.c.e.PropertySourcesPropertyResolver [PropertySourcesPropertyResolver.java:115] Found key 'jdbc.datasourcename' in PropertySource 'environmentProperties' with value of type String 2024-11-08 02:18:12.317 [main] DEBUG o.springframework.jndi.JndiTemplate [JndiTemplate.java:155] Looking up JNDI object with name [java:comp/env/jdbc.poolsize] 2024-11-08 02:18:12.317 [main] DEBUG o.s.jndi.JndiLocatorDelegate [JndiLocatorSupport.java:102] Converted JNDI name [java:comp/env/jdbc.poolsize] not found - trying original name [jdbc.poolsize]. javax.naming.NameNotFoundException: Name [jdbc.poolsize] is not bound in this Context. Unable to find [jdbc.poolsize]. 2024-11-08 02:18:12.318 [main] DEBUG o.springframework.jndi.JndiTemplate [JndiTemplate.java:155] Looking up JNDI object with name [jdbc.poolsize] 2024-11-08 02:18:12.318 [main] DEBUG o.s.jndi.JndiPropertySource [JndiPropertySource.java:101] JNDI lookup for name [jdbc.poolsize] threw NamingException with message: Name [jdbc.poolsize] is not bound in this Context. Unable to find [jdbc.poolsize].. Returning null. 2024-11-08 02:18:12.318 [main] DEBUG o.s.c.e.SystemEnvironmentPropertySource [SystemEnvironmentPropertySource.java:95] PropertySource 'systemEnvironment' does not contain property 'jdbc.poolsize', but found equivalent 'JDBC_POOLSIZE' 2024-11-08 02:18:12.318 [main] DEBUG o.s.c.e.PropertySourcesPropertyResolver [PropertySourcesPropertyResolver.java:115] Found key 'jdbc.poolsize' in PropertySource 'systemEnvironment' with value of type String 2024-11-08 02:18:12.318 [main] DEBUG o.s.c.e.PropertySourcesPropertyResolver [PropertySourcesPropertyResolver.java:115] Found key 'jdbc.poolsize' in PropertySource 'environmentProperties' with value of type String 2024-11-08 02:18:12.318 [main] DEBUG o.springframework.jndi.JndiTemplate [JndiTemplate.java:155] Looking up JNDI object with name [java:comp/env/jdbc.username] 2024-11-08 02:18:12.318 [main] DEBUG o.s.jndi.JndiLocatorDelegate [JndiLocatorSupport.java:102] Converted JNDI name [java:comp/env/jdbc.username] not found - trying original name [jdbc.username]. javax.naming.NameNotFoundException: Name [jdbc.username] is not bound in this Context. Unable to find [jdbc.username]. 2024-11-08 02:18:12.318 [main] DEBUG o.springframework.jndi.JndiTemplate [JndiTemplate.java:155] Looking up JNDI object with name [jdbc.username] 2024-11-08 02:18:12.318 [main] DEBUG o.s.jndi.JndiPropertySource [JndiPropertySource.java:101] JNDI lookup for name [jdbc.username] threw NamingException with message: Name [jdbc.username] is not bound in this Context. Unable to find [jdbc.username].. Returning null. 2024-11-08 02:18:12.319 [main] DEBUG o.s.c.e.SystemEnvironmentPropertySource [SystemEnvironmentPropertySource.java:95] PropertySource 'systemEnvironment' does not contain property 'jdbc.username', but found equivalent 'JDBC_USERNAME' 2024-11-08 02:18:12.319 [main] DEBUG o.s.c.e.PropertySourcesPropertyResolver [PropertySourcesPropertyResolver.java:115] Found key 'jdbc.username' in PropertySource 'systemEnvironment' with value of type String 2024-11-08 02:18:12.319 [main] DEBUG o.s.c.e.PropertySourcesPropertyResolver [PropertySourcesPropertyResolver.java:115] Found key 'jdbc.username' in PropertySource 'environmentProperties' with value of type String 2024-11-08 02:18:12.319 [main] DEBUG o.springframework.jndi.JndiTemplate [JndiTemplate.java:155] Looking up JNDI object with name [java:comp/env/jdbc.url] 2024-11-08 02:18:12.319 [main] DEBUG o.s.jndi.JndiLocatorDelegate [JndiLocatorSupport.java:102] Converted JNDI name [java:comp/env/jdbc.url] not found - trying original name [jdbc.url]. javax.naming.NameNotFoundException: Name [jdbc.url] is not bound in this Context. Unable to find [jdbc.url]. 2024-11-08 02:18:12.319 [main] DEBUG o.springframework.jndi.JndiTemplate [JndiTemplate.java:155] Looking up JNDI object with name [jdbc.url] 2024-11-08 02:18:12.319 [main] DEBUG o.s.jndi.JndiPropertySource [JndiPropertySource.java:101] JNDI lookup for name [jdbc.url] threw NamingException with message: Name [jdbc.url] is not bound in this Context. Unable to find [jdbc.url].. Returning null. 2024-11-08 02:18:12.319 [main] DEBUG o.s.c.e.SystemEnvironmentPropertySource [SystemEnvironmentPropertySource.java:95] PropertySource 'systemEnvironment' does not contain property 'jdbc.url', but found equivalent 'JDBC_URL' 2024-11-08 02:18:12.319 [main] DEBUG o.s.c.e.PropertySourcesPropertyResolver [PropertySourcesPropertyResolver.java:115] Found key 'jdbc.url' in PropertySource 'systemEnvironment' with value of type String 2024-11-08 02:18:12.320 [main] DEBUG o.s.c.e.PropertySourcesPropertyResolver [PropertySourcesPropertyResolver.java:115] Found key 'jdbc.url' in PropertySource 'environmentProperties' with value of type String 2024-11-08 02:18:12.320 [main] DEBUG o.springframework.jndi.JndiTemplate [JndiTemplate.java:155] Looking up JNDI object with name [java:comp/env/jdbc.password] 2024-11-08 02:18:12.320 [main] DEBUG o.s.jndi.JndiLocatorDelegate [JndiLocatorSupport.java:102] Converted JNDI name [java:comp/env/jdbc.password] not found - trying original name [jdbc.password]. javax.naming.NameNotFoundException: Name [jdbc.password] is not bound in this Context. Unable to find [jdbc.password]. 2024-11-08 02:18:12.320 [main] DEBUG o.springframework.jndi.JndiTemplate [JndiTemplate.java:155] Looking up JNDI object with name [jdbc.password] 2024-11-08 02:18:12.320 [main] DEBUG o.s.jndi.JndiPropertySource [JndiPropertySource.java:101] JNDI lookup for name [jdbc.password] threw NamingException with message: Name [jdbc.password] is not bound in this Context. Unable to find [jdbc.password].. Returning null. 2024-11-08 02:18:12.320 [main] DEBUG o.s.c.e.SystemEnvironmentPropertySource [SystemEnvironmentPropertySource.java:95] PropertySource 'systemEnvironment' does not contain property 'jdbc.password', but found equivalent 'JDBC_PASSWORD' 2024-11-08 02:18:12.320 [main] DEBUG o.s.c.e.PropertySourcesPropertyResolver [PropertySourcesPropertyResolver.java:115] Found key 'jdbc.password' in PropertySource 'systemEnvironment' with value of type String 2024-11-08 02:18:12.320 [main] DEBUG o.s.c.e.PropertySourcesPropertyResolver [PropertySourcesPropertyResolver.java:115] Found key 'jdbc.password' in PropertySource 'environmentProperties' with value of type String 2024-11-08 02:18:12.321 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.context.event.internalEventListenerProcessor' 2024-11-08 02:18:12.322 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.context.event.internalEventListenerFactory' 2024-11-08 02:18:12.323 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.transaction.config.internalTransactionalEventListenerFactory' 2024-11-08 02:18:12.326 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.context.annotation.internalAutowiredAnnotationProcessor' 2024-11-08 02:18:12.328 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.context.annotation.internalCommonAnnotationProcessor' 2024-11-08 02:18:12.330 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.context.annotation.internalScheduledAnnotationProcessor' 2024-11-08 02:18:12.330 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.scheduling.annotation.SchedulingConfiguration' 2024-11-08 02:18:12.337 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.aop.config.internalAutoProxyCreator' 2024-11-08 02:18:12.347 [main] DEBUG o.s.u.c.s.UiApplicationContextUtils [UiApplicationContextUtils.java:86] Unable to locate ThemeSource with name 'themeSource': using default [org.springframework.ui.context.support.ResourceBundleThemeSource@11faa224] 2024-11-08 02:18:12.348 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'fhirServerConfig' 2024-11-08 02:18:12.355 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'dataSource' 2024-11-08 02:18:12.357 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'hikariConfig' 2024-11-08 02:18:12.368 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.transaction.config.internalTransactionAdvisor' 2024-11-08 02:18:12.368 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'org.springframework.transaction.annotation.ProxyTransactionManagementConfiguration' 2024-11-08 02:18:12.376 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'transactionAttributeSource' 2024-11-08 02:18:12.380 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [DefaultSingletonBeanRegistry.java:225] Creating shared instance of singleton bean 'transactionInterceptor' 2024-11-08 02:18:12.381 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [ConstructorResolver.java:948] Autowiring by type from bean name 'transactionInterceptor' via factory method to bean named 'transactionAttributeSource' 2024-11-08 02:18:12.387 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [ConstructorResolver.java:948] Autowiring by type from bean name 'org.springframework.transaction.config.internalTransactionAdvisor' via factory method to bean named 'transactionAttributeSource' 2024-11-08 02:18:12.387 [main] DEBUG o.s.b.f.s.DefaultListableBeanFactory [ConstructorResolver.java:948] Autowiring by type from bean name 'org.springframework.transaction.config.internalTransactionAdvisor' via factory method to bean named 'transactionInterceptor' 2024-11-08 02:18:12.397 [main] WARN com.zaxxer.hikari.HikariConfig [HikariConfig.java:1089] springHikariCP - idleTimeout has been set but has no effect because the pool is operating as a fixed size pool. 2024-11-08 02:18:12.398 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1100] springHikariCP - configuration: 2024-11-08 02:18:12.400 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] allowPoolSuspension.............false 2024-11-08 02:18:12.400 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] autoCommit......................true 2024-11-08 02:18:12.401 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] catalog.........................none 2024-11-08 02:18:12.401 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] connectionInitSql...............none 2024-11-08 02:18:12.401 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] connectionTestQuery............."SELECT 1" 2024-11-08 02:18:12.402 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] connectionTimeout...............30000 2024-11-08 02:18:12.402 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] dataSource......................none 2024-11-08 02:18:12.402 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] dataSourceClassName............."org.postgresql.ds.PGSimpleDataSource" 2024-11-08 02:18:12.402 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] dataSourceJNDI..................none 2024-11-08 02:18:12.402 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] dataSourceProperties............{password=, user=postgres, url=jdbc:postgresql://ahc-hobi-gpu01.ahc.ufl.edu:5432/adrd1} 2024-11-08 02:18:12.403 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] driverClassName.................none 2024-11-08 02:18:12.403 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] exceptionOverrideClassName......none 2024-11-08 02:18:12.403 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] healthCheckProperties...........{} 2024-11-08 02:18:12.403 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] healthCheckRegistry.............none 2024-11-08 02:18:12.403 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] idleTimeout.....................30000 2024-11-08 02:18:12.403 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] initializationFailTimeout.......1 2024-11-08 02:18:12.403 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] isolateInternalQueries..........false 2024-11-08 02:18:12.404 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] jdbcUrl.........................none 2024-11-08 02:18:12.404 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] keepaliveTime...................0 2024-11-08 02:18:12.404 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] leakDetectionThreshold..........0 2024-11-08 02:18:12.404 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] maxLifetime.....................1800000 2024-11-08 02:18:12.404 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] maximumPoolSize.................5 2024-11-08 02:18:12.404 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] metricRegistry..................none 2024-11-08 02:18:12.404 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] metricsTrackerFactory...........none 2024-11-08 02:18:12.405 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] minimumIdle.....................5 2024-11-08 02:18:12.405 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] password........................ 2024-11-08 02:18:12.405 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] poolName........................"springHikariCP" 2024-11-08 02:18:12.405 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] readOnly........................false 2024-11-08 02:18:12.405 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] registerMbeans..................false 2024-11-08 02:18:12.405 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] scheduledExecutor...............none 2024-11-08 02:18:12.405 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] schema..........................none 2024-11-08 02:18:12.406 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] threadFactory...................internal 2024-11-08 02:18:12.406 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] transactionIsolation............default 2024-11-08 02:18:12.406 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] username........................none 2024-11-08 02:18:12.406 [main] DEBUG com.zaxxer.hikari.HikariConfig [HikariConfig.java:1132] validationTimeout...............5000 2024-11-08 02:18:12.410 [main] INFO com.zaxxer.hikari.HikariDataSource [HikariDataSource.java:80] springHikariCP - Starting... 2024-11-08 02:18:22.466 [main] DEBUG com.zaxxer.hikari.pool.PoolBase [PoolBase.java:373] springHikariCP - Failed to create/setup connection: The connection attempt failed. 2024-11-08 02:18:22.466 [main] DEBUG com.zaxxer.hikari.pool.HikariPool [HikariPool.java:498] springHikariCP - Cannot acquire connection from data source org.postgresql.util.PSQLException: The connection attempt failed. at org.postgresql.Driver$ConnectThread.getResult(Driver.java:395) at org.postgresql.Driver.connect(Driver.java:304) at java.sql/java.sql.DriverManager.getConnection(DriverManager.java:683) at java.sql/java.sql.DriverManager.getConnection(DriverManager.java:230) at org.postgresql.ds.common.BaseDataSource.getConnection(BaseDataSource.java:103) at org.postgresql.ds.common.BaseDataSource.getConnection(BaseDataSource.java:87) at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:359) at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:201) at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:470) at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:561) at com.zaxxer.hikari.pool.HikariPool.(HikariPool.java:100) at com.zaxxer.hikari.HikariDataSource.(HikariDataSource.java:81) at java.base/jdk.internal.reflect.DirectConstructorHandleAccessor.newInstance(DirectConstructorHandleAccessor.java:62) at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:502) at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:486) at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:210) at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:111) at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:315) at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:306) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1355) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1192) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:562) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:325) at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:323) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199) at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:254) at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1443) at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1353) at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:784) at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:767) at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:145) at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:508) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1419) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:599) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:325) at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:323) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199) at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:975) at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:959) at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:624) at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:394) at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:274) at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:102) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3966) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:4390) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:566) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:653) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:933) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1875) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:572) at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:123) at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:735) at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:387) at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1593) at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:267) at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:109) at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:385) at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:332) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:743) at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:771) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1170) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1160) at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:145) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:716) at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:203) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.StandardService.startInternal(StandardService.java:415) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:866) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.startup.Catalina.start(Catalina.java:755) at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103) at java.base/java.lang.reflect.Method.invoke(Method.java:580) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:342) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:470) Caused by: java.net.SocketTimeoutException: Connect timed out at java.base/sun.nio.ch.NioSocketImpl.timedFinishConnect(NioSocketImpl.java:546) at java.base/sun.nio.ch.NioSocketImpl.connect(NioSocketImpl.java:592) at java.base/java.net.SocksSocketImpl.connect(SocksSocketImpl.java:327) at java.base/java.net.Socket.connect(Socket.java:751) at org.postgresql.core.PGStream.createSocket(PGStream.java:243) at org.postgresql.core.PGStream.(PGStream.java:98) at org.postgresql.core.v3.ConnectionFactoryImpl.tryConnect(ConnectionFactoryImpl.java:132) at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:258) at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:54) at org.postgresql.jdbc.PgConnection.(PgConnection.java:263) at org.postgresql.Driver.makeConnection(Driver.java:444) at org.postgresql.Driver.access$100(Driver.java:63) at org.postgresql.Driver$ConnectThread.run(Driver.java:353) at java.base/java.lang.Thread.run(Thread.java:1583) 2024-11-08 02:18:23.468 [main] ERROR com.zaxxer.hikari.pool.HikariPool [HikariPool.java:594] springHikariCP - Exception during pool initialization. org.postgresql.util.PSQLException: The connection attempt failed. at org.postgresql.Driver$ConnectThread.getResult(Driver.java:395) at org.postgresql.Driver.connect(Driver.java:304) at java.sql/java.sql.DriverManager.getConnection(DriverManager.java:683) at java.sql/java.sql.DriverManager.getConnection(DriverManager.java:230) at org.postgresql.ds.common.BaseDataSource.getConnection(BaseDataSource.java:103) at org.postgresql.ds.common.BaseDataSource.getConnection(BaseDataSource.java:87) at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:359) at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:201) at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:470) at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:561) at com.zaxxer.hikari.pool.HikariPool.(HikariPool.java:100) at com.zaxxer.hikari.HikariDataSource.(HikariDataSource.java:81) at java.base/jdk.internal.reflect.DirectConstructorHandleAccessor.newInstance(DirectConstructorHandleAccessor.java:62) at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:502) at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:486) at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:210) at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:111) at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:315) at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:306) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1355) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1192) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:562) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:325) at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:323) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199) at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:254) at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1443) at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1353) at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:784) at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:767) at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:145) at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:508) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1419) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:599) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:325) at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:323) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199) at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:975) at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:959) at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:624) at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:394) at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:274) at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:102) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3966) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:4390) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:566) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:653) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:933) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1875) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:572) at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:123) at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:735) at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:387) at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1593) at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:267) at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:109) at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:385) at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:332) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:743) at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:771) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1170) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1160) at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:145) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:716) at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:203) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.StandardService.startInternal(StandardService.java:415) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:866) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.startup.Catalina.start(Catalina.java:755) at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103) at java.base/java.lang.reflect.Method.invoke(Method.java:580) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:342) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:470) Caused by: java.net.SocketTimeoutException: Connect timed out at java.base/sun.nio.ch.NioSocketImpl.timedFinishConnect(NioSocketImpl.java:546) at java.base/sun.nio.ch.NioSocketImpl.connect(NioSocketImpl.java:592) at java.base/java.net.SocksSocketImpl.connect(SocksSocketImpl.java:327) at java.base/java.net.Socket.connect(Socket.java:751) at org.postgresql.core.PGStream.createSocket(PGStream.java:243) at org.postgresql.core.PGStream.(PGStream.java:98) at org.postgresql.core.v3.ConnectionFactoryImpl.tryConnect(ConnectionFactoryImpl.java:132) at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:258) at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:54) at org.postgresql.jdbc.PgConnection.(PgConnection.java:263) at org.postgresql.Driver.makeConnection(Driver.java:444) at org.postgresql.Driver.access$100(Driver.java:63) at org.postgresql.Driver$ConnectThread.run(Driver.java:353) at java.base/java.lang.Thread.run(Thread.java:1583) 2024-11-08 02:18:23.470 [main] WARN o.s.w.c.s.AnnotationConfigWebApplicationContext [AbstractApplicationContext.java:632] Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'fhirServerConfig': Unsatisfied dependency expressed through field 'dataSource': Error creating bean with name 'dataSource' defined in class path resource [database-config.xml]: Failed to instantiate [com.zaxxer.hikari.HikariDataSource]: Constructor threw exception 2024-11-08 02:18:23.473 [main] ERROR o.s.web.context.ContextLoader [ContextLoader.java:294] Context initialization failed org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'fhirServerConfig': Unsatisfied dependency expressed through field 'dataSource': Error creating bean with name 'dataSource' defined in class path resource [database-config.xml]: Failed to instantiate [com.zaxxer.hikari.HikariDataSource]: Constructor threw exception at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:787) at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:767) at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:145) at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:508) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1419) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:599) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:325) at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:323) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199) at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:975) at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:959) at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:624) at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:394) at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:274) at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:102) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3966) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:4390) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:566) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:653) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:933) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1875) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:572) at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:123) at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:735) at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:387) at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1593) at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:267) at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:109) at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:385) at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:332) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:743) at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:771) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1170) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1160) at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:145) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:716) at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:203) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.StandardService.startInternal(StandardService.java:415) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:866) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164) at org.apache.catalina.startup.Catalina.start(Catalina.java:755) at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103) at java.base/java.lang.reflect.Method.invoke(Method.java:580) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:342) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:470) Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dataSource' defined in class path resource [database-config.xml]: Failed to instantiate [com.zaxxer.hikari.HikariDataSource]: Constructor threw exception at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:318) at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:306) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1355) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1192) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:562) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:325) at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:323) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199) at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:254) at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1443) at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1353) at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:784) ... 54 common frames omitted Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [com.zaxxer.hikari.HikariDataSource]: Constructor threw exception at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:223) at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:111) at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:315) ... 67 common frames omitted Caused by: com.zaxxer.hikari.pool.HikariPool$PoolInitializationException: Failed to initialize pool: The connection attempt failed. at com.zaxxer.hikari.pool.HikariPool.throwPoolInitializationException(HikariPool.java:596) at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:582) at com.zaxxer.hikari.pool.HikariPool.(HikariPool.java:100) at com.zaxxer.hikari.HikariDataSource.(HikariDataSource.java:81) at java.base/jdk.internal.reflect.DirectConstructorHandleAccessor.newInstance(DirectConstructorHandleAccessor.java:62) at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:502) at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:486) at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:210) ... 69 common frames omitted Caused by: org.postgresql.util.PSQLException: The connection attempt failed. at org.postgresql.Driver$ConnectThread.getResult(Driver.java:395) at org.postgresql.Driver.connect(Driver.java:304) at java.sql/java.sql.DriverManager.getConnection(DriverManager.java:683) at java.sql/java.sql.DriverManager.getConnection(DriverManager.java:230) at org.postgresql.ds.common.BaseDataSource.getConnection(BaseDataSource.java:103) at org.postgresql.ds.common.BaseDataSource.getConnection(BaseDataSource.java:87) at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:359) at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:201) at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:470) at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:561) ... 75 common frames omitted Caused by: java.net.SocketTimeoutException: Connect timed out at java.base/sun.nio.ch.NioSocketImpl.timedFinishConnect(NioSocketImpl.java:546) at java.base/sun.nio.ch.NioSocketImpl.connect(NioSocketImpl.java:592) at java.base/java.net.SocksSocketImpl.connect(SocksSocketImpl.java:327) at java.base/java.net.Socket.connect(Socket.java:751) at org.postgresql.core.PGStream.createSocket(PGStream.java:243) at org.postgresql.core.PGStream.(PGStream.java:98) at org.postgresql.core.v3.ConnectionFactoryImpl.tryConnect(ConnectionFactoryImpl.java:132) at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:258) at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:54) at org.postgresql.jdbc.PgConnection.(PgConnection.java:263) at org.postgresql.Driver.makeConnection(Driver.java:444) at org.postgresql.Driver.access$100(Driver.java:63) at org.postgresql.Driver$ConnectThread.run(Driver.java:353) at java.base/java.lang.Thread.run(Thread.java:1583) 08-Nov-2024 02:18:23.474 SEVERE [main] org.apache.catalina.core.StandardContext.startInternal One or more listeners failed to start. Full details will be found in the appropriate container log file 08-Nov-2024 02:18:23.478 SEVERE [main] org.apache.catalina.core.StandardContext.startInternal Context [] startup failed due to previous errors 08-Nov-2024 02:18:23.499 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [ROOT] registered the JDBC driver [org.postgresql.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered. 08-Nov-2024 02:18:23.510 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/usr/local/tomcat/webapps/ROOT.war] has finished in [16,514] ms 08-Nov-2024 02:18:23.512 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"] 08-Nov-2024 02:18:23.519 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [16574] milliseconds