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ulelab
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peka
Find motifs enriched around prominent crosslinks
GNU General Public License v3.0
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Fixed future warning in pandas concat, and cleaned up…
#27
kkuret
closed
6 months ago
0
Update README.md
#26
kkuret
closed
6 months ago
0
Update setup.py
#25
kkuret
closed
6 months ago
0
Dev
#24
kkuret
closed
6 months ago
0
test data works, but own data gives: ValueError: Overlapping IntervalIndex is not accepted.
#23
MWSprivate
closed
7 months ago
3
Working with cross-link sites identified using iCount with overlapping indicies
#22
a-thind
closed
6 months ago
6
Update dependencies
#21
kkuret
closed
10 months ago
0
Revert "Update dependencies"
#20
kkuret
closed
10 months ago
0
Update dependencies
#19
kkuret
closed
10 months ago
0
Fix - script exits when regions file lacks any of the expected regions; minor fixes
#18
kkuret
closed
10 months ago
0
PEKA on intronless genomes
#17
sykorami
closed
1 year ago
6
Example input files?
#16
grexor
closed
1 year ago
4
Minor fixes072022
#15
kkuret
closed
2 years ago
0
Determination of relevant positions, Bugfixes for working with soft-masked genome, other minor fixes
#14
kkuret
closed
2 years ago
0
Question on how to make use of CLIP-Seq biological replicates?
#13
Linhua-Sun
closed
2 years ago
2
Puzzle about the Figure 1g about Heatmaps showing relative occurrences (RtXn) and PEKA-scores for top 40 k-mers
#12
Linhua-Sun
closed
1 year ago
4
If percentile is set to 0, set all crosslinks within peaks as tXn.
#11
kkuret
closed
2 years ago
0
Ensembl compatibility, Random seed set for background sampling
#10
kkuret
closed
2 years ago
0
Fix clustering and add example results
#9
kkuret
closed
2 years ago
0
Fixed parsing of boolean arguments in argparse and added test data
#8
kkuret
closed
2 years ago
0
fixes: CLI, function names, syntax cleanup
#7
kkuret
closed
2 years ago
0
ValueError: Overlapping IntervalIndex is not accepted.
#6
yuanjianwen-gif
closed
2 years ago
6
Hi, can you provide sample data to see whether it works or not? Very appreciate for that.
#5
yuanjianwen-gif
closed
2 years ago
1
Added setup.py
#4
marc-jones
closed
2 years ago
0
Argparse fixes
#3
kkuret
closed
3 years ago
0
Repeats clustering
#2
kkuret
closed
3 years ago
0
Feat argparse cli
#1
CharlotteAnne
closed
3 years ago
0