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umccr
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RNAsum
Pipeline for generating RNAseq-based cancer patient reports
https://umccr.github.io/RNAsum/
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Update cli with sv_tsv
#179
pdiakumis
closed
3 weeks ago
0
sv_prioritize: fix Genes column
#178
pdiakumis
closed
1 month ago
0
SBJ05830 L2401535 202410263343c8cb error
#177
pdiakumis
closed
1 month ago
0
Bug when no SV TSV provided
#176
pdiakumis
closed
1 month ago
0
Handling new PURPLE CNV file
#175
pdiakumis
closed
1 month ago
0
Handle new PURPLE CNV file
#174
pdiakumis
closed
1 month ago
0
Do not run SV chunks when 0 expressed SV genes
#173
pdiakumis
closed
2 months ago
0
Handle when no SV genes are expressed
#172
pdiakumis
closed
2 months ago
0
Sash SV support and generalise SV input
#171
skanwal
closed
2 months ago
0
Switch from bumpversion to bump-my-version
#170
pdiakumis
closed
2 months ago
0
PCGR v2 support: Handle VAF_TUMOR and ACTIONABILITY_TIER
#169
pdiakumis
closed
2 months ago
1
Handle PCGR v2 Input
#168
pdiakumis
closed
2 months ago
0
Handle edge case when no tiered PCGR variants
#167
pdiakumis
closed
2 months ago
0
Initialise citation file
#166
skanwal
closed
2 months ago
0
Inconsistency in "library size" info
#165
JMarzec
opened
2 months ago
2
Tasks to address when adding option to use“full” TCGA reference cohort
#164
JMarzec
opened
3 months ago
1
Consider introducing negation flags
#163
skanwal
opened
3 months ago
0
update inst/scripts/icav1_download_and_run.R
#162
pdiakumis
closed
3 months ago
0
Handle missing `plot_legend1` in `data_transformation_plot` else condition
#161
pdiakumis
opened
3 months ago
0
Update links in the Readme
#160
skanwal
closed
2 months ago
2
Sync READMEs
#159
pdiakumis
closed
3 months ago
1
Filtered normalised genes
#158
skanwal
opened
4 months ago
0
Update description for z-score plots
#157
skanwal
opened
4 months ago
2
PieDB comparison
#156
skanwal
closed
4 months ago
0
Arrange fusions df
#155
pdiakumis
closed
4 months ago
0
Update cancer gene list used in the Rpackage
#154
skanwal
opened
5 months ago
0
Fix order of Arriba plots displayed in the report output from Rpackage
#153
skanwal
closed
4 months ago
0
Check for missing RNA fusions with DNA support
#152
skanwal
opened
5 months ago
0
Add CWL launcher scripts
#151
pdiakumis
closed
7 months ago
0
Add code of conduct and contribution guideline
#150
skanwal
closed
7 months ago
1
Add ragg dependency
#149
pdiakumis
closed
7 months ago
0
Add back gpgr dependency
#148
pdiakumis
closed
8 months ago
1
Error in `grid.newpage()`: could not open file
#147
pdiakumis
closed
7 months ago
2
manta: bind_rows handles NULL better
#146
pdiakumis
closed
8 months ago
1
Handle Manta SV without fusions
#145
pdiakumis
closed
7 months ago
1
Copy gpgr ppl_cnv_som_gene_read over
#144
pdiakumis
closed
8 months ago
0
Include a check for quant.sf file
#143
skanwal
closed
8 months ago
0
update readme for r-package
#142
skanwal
opened
8 months ago
0
Consider removing immune section
#141
skanwal
opened
8 months ago
0
Library size plot: add patient label
#140
pdiakumis
opened
8 months ago
0
Consider Simplified RNAsum reporter
#139
pdiakumis
opened
8 months ago
0
DB: Ingest Fusions
#138
pdiakumis
opened
8 months ago
0
Add support for transcript level counts in R-package code
#137
skanwal
opened
9 months ago
0
Fix Ensembl RDS parsing
#136
skanwal
closed
9 months ago
0
Prod vs dev comparisons
#135
pdiakumis
closed
10 months ago
0
Debug: Duplicate fusions
#134
skanwal
opened
10 months ago
0
Move rm expression before circos table view
#133
pdiakumis
closed
10 months ago
1
Circos table not showing up
#132
pdiakumis
closed
8 months ago
0
no 'dimnames' attribute for array
#131
skanwal
closed
8 months ago
1
Explicitly rename Diff_Perc and Diff_Z_score columns
#130
pdiakumis
closed
10 months ago
0
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