search

urol-e5 / deep-dive

0 stars 0 forks source link

Compare de novo transcriptome assembly to different genome gene sets. #9

Closed sr320 closed 1 year ago

hputnam commented 1 year ago

We need to use the mTORF information to use only RNASeq data from a single species.

hputnam commented 1 year ago

Trinity or SPADES?

jarcasariego commented 1 year ago

Found this blog with code for genome guided de-novo assembly with trinity

AHuffmyer commented 1 year ago

Please add links to the different genome sets that we are interested in comparing and outline the steps that we need to follow to accomplish this. Use mtORF data to determine species for samples and then select RNAseq data for this issue from one species.