MergeVCFs generated GVCFs without indexes - Githubissues

va-big-data-genomics / trellis-mvp-functions

Trellis serverless data management framework for variant calling of VA MVP whole-genome sequencing data.

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MergeVCFs generated GVCFs without indexes #29

Open pbilling opened 2 years ago

pbilling commented 2 years ago

Investigation of issue: https://github.com/StanfordBioinformatics/trellis-mvp-functions/blob/release-1.3.0/notebooks/issue-gvcfs-missing-indexes.ipynb