vari-bbc / variants-gatk4

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remove references to shared snakemake #3

Closed kew24 closed 1 year ago

kew24 commented 1 year ago

Instead of relying on the shared snakemake, this just incorporates those 3 rules directly into the pipeline.

I also updated the README to provide different examples of the partitions to submit to, so that other users don't try submitting to the BBC partition. I can revert this or shorten it if it's needlessly complicated, though.

genomics-kl commented 1 year ago

Looks good. Thanks!