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hyphy
HyPhy: Hypothesis testing using Phylogenies
http://www.hyphy.org
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DataMonkey not recognizing forground branches
#1720
ebraun68
opened
3 weeks ago
1
test for detecting compartmentalization in dataMonkey
#1719
BlasiMar
opened
3 weeks ago
1
Failed to dereference error with FitMG94 and the local option
#1718
Percud
closed
2 weeks ago
2
Analysis ends but does not progress to report generation
#1717
hkunerth
opened
3 weeks ago
4
error
#1716
vitt2022
opened
4 weeks ago
6
v2.5.62
#1715
spond
closed
1 month ago
1
How to select positive signals of the foreground branch from the results of aBSREL modle
#1714
aaannaw
opened
1 month ago
3
Persistent error when running Gard
#1713
MiloEliot
opened
1 month ago
4
aBSREL run time
#1712
lagphase
closed
1 month ago
5
What is HyPhy calling the 2 nodes pointed at with arrows in this tree (image and txt file attached)?
#1711
glitterseaworms
closed
1 month ago
2
BUSTED error: tree_id_0 is not a supported object type in call to SetParameter
#1710
00-kelvin
closed
1 month ago
9
Error: Internal error Constrained optimization failed, since a starting point within the domain specified for the variables couldn't be found. Set it by hand, or check your constraints for compatibility.
#1709
glitterseaworms
closed
1 month ago
3
When does RELAX collapse rate classes?
#1708
NatJWalker-Hale
closed
1 month ago
4
Multiple Testing Correction in BUSTED vs absREL
#1707
NicMAlexandre
opened
1 month ago
4
hyphy MolecularClockF81.bf failed to compute a valid transition matrix
#1706
emollier
closed
1 month ago
2
Fix code scanning alert - Wrong type of arguments to formatting function
#1705
spond
closed
2 months ago
0
2.5.61
#1704
spond
closed
2 months ago
1
FEL not working - Error included
#1703
SculpturatusLabs
closed
2 months ago
1
Questions about BUSTED and an error code 102
#1702
irislin886
closed
2 months ago
7
Standard Error aBSREL
#1701
LesterJP
closed
1 month ago
4
Skipped user prompt in SM-2019.bf
#1700
ArtPoon
closed
2 months ago
2
Datamonkey does not recognized some sequences
#1699
K-Gutierrez
closed
3 months ago
3
Error when using RELAX
#1698
Oswaldz
closed
1 month ago
5
DATAMONKEY - MULTI-HIT
#1697
TuruuBat
closed
2 months ago
4
busted creates tree but then errors
#1696
sobregon1
closed
2 months ago
4
2.5.60 RC
#1695
stevenweaver
closed
4 months ago
1
amino acid sequences
#1694
ElvisFFVII
closed
1 month ago
2
No JSON file output from absrel
#1693
ShanfenO
closed
1 month ago
8
MEME errorcode1 repeated message issues
#1692
cmariencheck
closed
4 months ago
5
MEME Output Interpretation
#1691
oscarwallnoefer
closed
3 months ago
2
If the branch lenghth in species tree are necessary in my analysis using hyphy?
#1690
Neo-xbx-00
closed
2 months ago
4
aBSREL Corrected p-value is 0
#1689
lmnano
closed
4 months ago
2
GARD: Internal error in ComputeBranchCache
#1688
matthewglasenapp
closed
4 months ago
2
Convergence Issues In FEL and MEME
#1687
gykoh
closed
1 month ago
8
meme output "Most common codon substitutions at this site" including Ns
#1686
axeljen
closed
2 months ago
2
RELAX empty files in results, and results differing when re-run
#1685
lmnano
closed
2 months ago
7
Different results in command line and web
#1684
LalicJ
closed
2 months ago
9
Identify nodes in a phylogeny
#1683
psorigue
closed
3 months ago
11
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 1.
#1682
SHAOHUAMUZI
closed
3 months ago
6
missing PRIME online documentation
#1681
kaw97
closed
3 months ago
2
FUBAR output json contains null values
#1680
StefanFrankBio
closed
3 months ago
2
Slight difference in GARD breakpoint location: screen output vs screened data
#1679
katherinermartin
closed
3 months ago
2
Discordant results between FEL and MEME on Datamonkey
#1678
katherinermartin
closed
5 months ago
2
Develop
#1677
spond
closed
5 months ago
2
Visualization of aBSREL results
#1676
WRran-Hydrogen
closed
5 months ago
7
Issue in GARD generated nex file
#1675
Daniyalprime
closed
3 months ago
12
Contrast-Fel and Comparing Multiple Groups
#1674
evandiego83
closed
6 months ago
4
2.5.58
#1673
spond
closed
6 months ago
0
Same P-value before and after correction
#1672
tongyin121
closed
6 months ago
3
Applying partitions from GARD to only some genes in alignment?
#1671
katherinermartin
closed
4 months ago
5
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