Add agat sp extract attributes - Githubissues

viash-hub / biobox

🌱📦 A collection of bioinformatics tools for working with sequence data.

https://web.viash-hub.dev/package/biobox

MIT License

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Add agat sp extract attributes #131

Open Leila011 opened 3 months ago

Leila011 commented 3 months ago

Description

Added agat_sp_extract_attributes

Issue ticket number

Closes #xxxx

Checklist before requesting a review

[x] I have performed a self-review of my code
[x] Conforms to the Contributing guidelines
[x] Proposed changes are described in the CHANGELOG.md
[x] I have tested my code with viash ns test --parallel -q <name or namespace>
Check the correct box. Does this PR contain:
- [ ] Breaking changes
- [x] New functionality
- [ ] Major changes
- [ ] Minor changes
- [ ] Documentation
- [ ] Bug fixes

Leila011 commented 3 months ago

The parameter --output can take path/to/output/output.txt but will ultimately be path/to/output/output_attributeTag.txt with one file being create for each attribute tag. Should I leave it like that or should I create variable output_dir and output_prefix to make it more clean?