Closed sainirmayi closed 3 weeks ago
bbmap_bbsplit
--build
--index
kallisto_index
--threads
kallisto_quant
rsem_calculate_expression
sortmerna
umi_tools_extract
--umi_discard_reads
--log2stderr
Closes #xxxx
[x] I have performed a self-review of my code
[ ] Conforms to the Contributing guidelines
[ ] Proposed changes are described in the CHANGELOG.md
[x] I have tested my code with viash ns test --parallel -q <name or namespace>
viash ns test --parallel -q <name or namespace>
Check the correct box. Does this PR contain:
Description
bbmap_bbsplit: Fix argument type of--buildto file and add output argument--index.kallisto_index: Fix--threadsoption.kallisto_quant: Fix output argument type and add output log file.rsem_calculate_expression: Fix command and output files.sortmerna: Fix output arguments and update docker image.umi_tools_extract: Remove--umi_discard_readsoption and fix--log2stderrargument.Issue ticket number
Closes #xxxx
Checklist before requesting a review
[x] I have performed a self-review of my code
[ ] Conforms to the Contributing guidelines
[ ] Proposed changes are described in the CHANGELOG.md
[x] I have tested my code with
viash ns test --parallel -q <name or namespace>Check the correct box. Does this PR contain: