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viash-hub
/
biobox
🌱📦 A collection of bioinformatics tools for working with sequence data.
https://web.viash-hub.dev/package/biobox
MIT License
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6
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BUG: cutadapt base quality cutoff arguments have the wrong type
#66
DriesSchaumont
closed
5 months ago
1
fix package config
#65
rcannood
closed
5 months ago
0
Delete src/bgzip directory
#64
rcannood
closed
5 months ago
0
Update operational code
#63
rcannood
closed
5 months ago
0
Add star solo component
#62
rcannood
closed
4 months ago
3
FEAT: add csv2fasta
#61
DriesSchaumont
closed
5 months ago
4
Update repo name from biobase to biobox
#60
tverbeiren
closed
5 months ago
0
FEAT: add bedtools getfasta.
#59
DriesSchaumont
closed
5 months ago
0
Add star genomegenerate component
#58
sainirmayi
closed
5 months ago
0
Update salmon quant arguments
#57
sainirmayi
closed
5 months ago
0
Output alignments to the transcriptome
#56
sainirmayi
closed
5 months ago
0
format URL in the description
#55
Leila011
closed
6 months ago
0
Umi tools dedup
#54
emmarousseau
closed
4 months ago
0
Samtools fasta
#53
emmarousseau
closed
4 months ago
0
Samtools fastq
#52
emmarousseau
closed
6 months ago
0
Update viash
#51
rcannood
closed
6 months ago
0
add escaping character before leading hashtag
#50
Leila011
closed
6 months ago
0
Samtools collate
#49
emmarousseau
closed
6 months ago
0
Samtools view
#48
emmarousseau
closed
6 months ago
0
BUG: multiqc always ignores symlinked directories.
#47
DriesSchaumont
closed
6 months ago
0
FEAT: Add --cl_config to MultiQC
#46
DriesSchaumont
closed
6 months ago
0
FEAT: require 'ps' command to be available.
#45
DriesSchaumont
closed
6 months ago
0
BUG: Fix BCL convert docker image missing 'ps' command
#44
DriesSchaumont
closed
7 months ago
0
Falco
#43
tverbeiren
closed
7 months ago
0
Multiqc
#42
dorien-er
closed
7 months ago
0
Samtools faidx
#41
emmarousseau
closed
7 months ago
0
Fix configs
#40
emmarousseau
closed
7 months ago
0
Samtools stats
#39
emmarousseau
closed
7 months ago
0
`gffread` should not have a namespace
#38
tverbeiren
closed
6 months ago
1
Add bcl_convert component, including unit tests
#37
tverbeiren
closed
7 months ago
2
Samtools sort
#36
emmarousseau
closed
7 months ago
0
Fix test and script
#35
tverbeiren
closed
8 months ago
0
Fix missing slash in path construction
#34
Grifs
closed
8 months ago
1
Samtools index
#33
emmarousseau
closed
7 months ago
0
Samtools idxstats component
#32
emmarousseau
closed
8 months ago
1
Samtools flagstats
#31
emmarousseau
closed
8 months ago
0
Samtools flagstat
#30
emmarousseau
closed
8 months ago
1
Add gffread
#29
emmarousseau
closed
8 months ago
1
webhook experiment
#28
tverbeiren
closed
8 months ago
0
Update CONTRIBUTING.md for Viash 0.9
#27
rcannood
closed
8 months ago
0
Propose changes to cutadapt
#26
rcannood
closed
9 months ago
2
Change multiple separator to ;
#25
rcannood
closed
9 months ago
0
Add salmon
#24
sainirmayi
closed
8 months ago
2
Uniformize metadata
#23
rcannood
closed
9 months ago
0
Add star_align_reads component
#22
rcannood
closed
9 months ago
0
Update CONTRIBUTING.md
#21
rcannood
closed
4 months ago
1
Fix featurecounts
#20
sainirmayi
closed
9 months ago
0
add busco_download_datasets component
#19
dorien-er
closed
9 months ago
1
Busco list datasets
#18
dorien-er
closed
9 months ago
3
Add lofreq
#17
KaiWaldrant
closed
9 months ago
0
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