In the documentation, there is a pipeline called single_sample_decontx_scrublet, but when I try to create the config, it throws the error:
Unknown configuration profile: 'single_sample_decontx_scrublet'
It seems that the ones that actually exist (in nextflow.config) are single_sample_decontx_correct, single_sample_decontx_filter_scrublet and single_sample_decontx_correct_scrublet (and they work for creating the config file… )
(Btw, I don't see the explanation of the difference between decontx_correct and decontx_filter either)
In the documentation, there is a pipeline called
single_sample_decontx_scrublet, but when I try to create the config, it throws the error:Unknown configuration profile: 'single_sample_decontx_scrublet'It seems that the ones that actually exist (in nextflow.config) are
single_sample_decontx_correct,single_sample_decontx_filter_scrubletandsingle_sample_decontx_correct_scrublet(and they work for creating the config file… )(Btw, I don't see the explanation of the difference between
decontx_correctanddecontx_filtereither)