Develop a minimal viable product (MVP) for integration of SpringSalad into VCell.
Motivation
VCell supports agent-based rule based simulations using NFSim, and non-rule-based particle simulations using Smoldyn. SpringSalad is an agent based simulation solver which uses a coarse-grained spatial representation of molecules. SpringSalad was developed independently of vcell, but can and should be integrated into vcell as another Application type, and the solver and simulation resutls should also be integrated.
Completion Criteria
SpringSalad Math model and Langevin solver should be fully integrated (modeling, computation, data processing)
SpringSalad BioModel applications should be supported.
Develop a minimal viable product (MVP) for integration of SpringSalad into VCell.
Motivation
VCell supports agent-based rule based simulations using NFSim, and non-rule-based particle simulations using Smoldyn. SpringSalad is an agent based simulation solver which uses a coarse-grained spatial representation of molecules. SpringSalad was developed independently of vcell, but can and should be integrated into vcell as another Application type, and the solver and simulation resutls should also be integrated.
Completion Criteria
Tasks
Future work (out of scope)