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vistalab / vistasoft

VISTASOFT is the main software repository of the VISTA lab at Stanford University.
http://vistalab.stanford.edu
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Anatomy transform different between hidden volume and volume window #308

Open emilykubota opened 5 years ago

emilykubota commented 5 years ago

I'm trying to write out functional overlays as nifti files, and there is an error for some of my subjects when I initialize a hidden volume view, but not when I write out the overlay from the GUI (volume window).

I tracked it down to the function nifti2mrVistaAnat, which seems to be called when a volume window is opened, but not when a hidden volume view is initialized. I think this transform should happen in both the hidden volume view and the volume window, but I wanted to check to make sure.

I have data for a test subject and my code in the repository hiddenVolumeQuestion.

Thank you!!