vistalab / vistasoft

VISTASOFT is the main software repository of the VISTA lab at Stanford University.
http://vistalab.stanford.edu
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Writing tck file from vistasoft.... #341

Closed htakemur closed 4 years ago

htakemur commented 4 years ago

Hello,

When I tried to see .tck file exported from vistasoft in MRView, I got a following error:

Mrview_Errormessage

I guess that perhaps some information on .tck export may not have some header information required in MRView. If any of you had a similar experience, I would like to discuss how to move forward.

soichih commented 4 years ago

@Hiromasa Takemura htakemura0207@gmail.com

I can't think of why this is happening, can you run "head track.tck" to show what's at the top of your .tck? You should see something like

mrtrix tracks
act: 5tt.mif
backtrack: variable
crop_at_gmwmi: 1
downsample_factor: 3
fod_power: 0.25
init_threshold: 0.0500000007
lmax: variable
max_angle: variable
max_num_seeds: 15000000
...

By the way, I am attending some personal business. I might not be able to respond until later next week.

On Thu, Aug 20, 2020 at 10:52 PM Hiromasa Takemura notifications@github.com wrote:

Hello @soichih https://github.com/soichih

I think that you contributed some function for exporting fg file to .tck format.

When I tried to see .tck file exported from vistasoft in MRView, I got a following error:

[image: Mrview_Errormessage] https://user-images.githubusercontent.com/2679022/90847075-a3c59c80-e3a4-11ea-87fb-14f5e5b396d9.png

I guess that perhaps some information on .tck export may not have some header information required in MRView. Do you have any thoughts on this, or have you ever seen similar error?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/vistalab/vistasoft/issues/341, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAHBR6HOVTCERAZFHF57P6DSBXOQFANCNFSM4QG2EX5Q .

htakemur commented 4 years ago

I will have a look at header informations, and try to compare those of tck files which work and do not work with mrView. I appreciate your response; I will try to handle it by myself at this moment.

htakemur commented 4 years ago

I think that I figured out the issue --- please see my pull request. I will close this issue.