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vivarium-collective
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vivarium-biosimulators
A Vivarium wrapper for BioSimulators
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feat: `GenericSimulatorProcess` object
#25
AlexPatrie
closed
1 year ago
1
Ode_Fba.ipynb notebook giving error
#24
siddharth0112358
opened
2 years ago
3
biosimulators-tellurium segfault
#23
eagmon
opened
2 years ago
1
Fba update
#22
eagmon
closed
3 years ago
15
fix double free error in requirements
#21
eagmon
closed
3 years ago
4
fix double free error
#20
eagmon
closed
3 years ago
0
working on double free error in GitHub action...
#19
eagmon
closed
3 years ago
0
failing pytest double free or corruption (fasttop)
#18
eagmon
closed
3 years ago
0
Tellurium/COBRApy demo
#17
eagmon
closed
3 years ago
0
suppress BioNetGen print out
#16
eagmon
closed
3 years ago
3
Expand biosimulators tests that run in docker
#15
eagmon
opened
3 years ago
1
get ODE_FBA composite working with a tellurium/cobra configuration
#14
eagmon
closed
3 years ago
3
input/output ports
#13
eagmon
closed
3 years ago
0
generalize BiosimulatorsProcess and expand test cases
#12
eagmon
closed
3 years ago
0
Add documentation for using licenses for commercial dependencies
#11
jonrkarr
opened
3 years ago
1
add dockerfile
#10
eagmon
closed
3 years ago
3
Update use of `get_parameters_variables_for_simulation` to native model ids and data types
#9
jonrkarr
closed
3 years ago
1
Use Docker images to execute simulation steps
#8
jonrkarr
opened
3 years ago
0
import biosimulator module in the init
#7
eagmon
closed
3 years ago
5
initial state
#6
eagmon
closed
3 years ago
7
Begin TelluriumComposer
#5
eagmon
closed
3 years ago
0
chore: introduced model changes and observables
#4
jonrkarr
closed
3 years ago
2
Require biosimulators-utils 0.1.115
#3
jonrkarr
closed
3 years ago
0
pytest configuration to ignore BioSimulators warnings
#2
jonrkarr
closed
3 years ago
0
Added configuration
#1
jonrkarr
closed
3 years ago
0