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Issue with running denovo_motifs #11

Open krovi137 opened 1 month ago

krovi137 commented 1 month ago

Hello,

I am currently attempting to identify the denovo motifs enriched in a different mouse strain using the denovo_motifs function but keep receiving the following errors:

Loading shift vectors Use of uninitialized value in hash dereference at /home/rstudio/MMARGE/MMARGE_v1.0//bin/general.pm line 47. Skip peaks for chromosome X allele 1 in get_seq_for_peaks Intervals must have positive width at /home/rstudio/MMARGE/MMARGE_v1.0//bin/analysis_tree.pm line 1079. readline() on closed filehandle IN at /home/rstudio/homer/bin/cleanUpSequences.pl line 31.

Please let me know how best to proceed.

Thanks! Harsha

krovi137 commented 2 weeks ago

Hello,

I hope you're doing well! I was wondering if you would be able to assist with this problem? I still have not yet been able to resolve this issue. Any help would be sincerely appreciated!! Thank you so much!

Harsha