MitoFinder

[laraPPr]

• link to support ticket: #2023092260001054
• website: https://github.com/RemiAllio/MitoFinder
• installation docs: https://github.com/RemiAllio/MitoFinder
• toolchain: ...
• easyblock to use: ...
• required dependencies:
  • [ ] automake
  • [ ] autoconf
  • [ ] java
• optional dependencies:
  • [ ] ...
• notes:
  • ...
• effort: (TBD)
• other install methods
  • conda: no
  • container image: yes
  • pre-built binaries (RHEL8 Linux x86_64): no
  • easyconfig outside EasyBuild: no

[boegel]

related to MitoHiFi (see #198)

[boegel]

MitoFinder requires Python 2.7.18 (see also https://github.com/RemiAllio/MitoFinder/issues/19), while MitoHiFi that depends on it requires Python 3

options:

• use fork of MitoFinder that was ported to Python 3, see https://github.com/jacquefm/MitoFinder-python3
• change default in MitoHifi to use MITOS instead of MitoFinder for annotation

[boegel]

@deniskristak Can you take a look at this?

[deniskristak]

seems like this is not necessary

[boegel]

@deniskristak There is an explicit installation request for this, separate from MitoHiFi.

The question is whether it should be installed with Python 2 (which is probably fine to run it standalone), or whether it needs to be patched to be compatible with Python 3 (since it's a dependency for MitoHiFi, which requires Python 3)

[deniskristak]

opened PR in that case

[boegel]

PR needs more work, since we really don't want to use that funky install.sh script...