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walaj / bxtools

Tools for analyzing 10X Genomics data
MIT License
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installation error #20

Open frankbioinfo opened 7 years ago

frankbioinfo commented 7 years ago

Hello team,

Thanks for developing bxtools.

While installing i encounter this error.

thread_pool.c: In function ‘hts_tpool_init’: thread_pool.c:676: warning: implicit declaration of function ‘pthread_mutexattr_settype’ thread_pool.c:676: error: ‘PTHREAD_MUTEX_RECURSIVE’ undeclared (first use in this function) thread_pool.c:676: error: (Each undeclared identifier is reported only once thread_pool.c:676: error: for each function it appears in.) make[2]: *** [thread_pool.o] Error 1

Is it common?

Thanks.

Frank

walaj commented 6 years ago

Hi Frank, Are you still having this issue? Are you able to compile htslib, aside from bxtools? That might give some clues. I haven't seen this issue before. Jeremiah

brainstorm commented 6 years ago

Alternatively you can now install this package with Bioconda:

https://github.com/bioconda/bioconda-recipes/pull/8205

frankbioinfo commented 6 years ago

Sorry all, i was able to install it using docker image, can i request if anyone from the team can build a docker image for this it will be very helpful just a thought.

Thanks for response.

Frank