complete.cases error possibly related to mapToList

waldronlab / MultiAssayExperiment

Bioconductor package for management of multi-assay data

https://waldronlab.io/MultiAssayExperiment/

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complete.cases error possibly related to mapToList #260

Closed aljabadi closed 5 years ago

aljabadi commented 5 years ago

Just letting you know about the following behaviour for the devel version:

library(MultiAssayExperiment)
data("miniACC")
complete.cases(miniACC)
#> Error in validObject(.Object): invalid class "CompressedSplitDFrameList" object: invalid object for slot "unlistData" in class "CompressedSplitDFrameList": got class "DataFrame", should be or extend class "DFrame"

I think it might be an IRanges issue. Not sure though.

LiNk-NY commented 5 years ago

Hi Al, @ajabadi Thank you for the issue, this has to do with recent changes to DataFrame. I will update here once the dust settles with all the changes in S4Vectors.

Best, Marcel

LiNk-NY commented 5 years ago

This should be working now. Thanks!