Closed MattAWard closed 1 year ago
What exactly do you mean by head and neck segmentation? What structures would you like to have segmented?
This would be for segmentation relating to head and neck radiotherapy. Regions of interest typically include:
Thanks.
Any idea about this? As I said, an ability to train a model using our own anonymised CT data sets with these structures outlined would also be a great solution.
Training a nnUNet should not be too difficult. You have to convert your data to nifti and follow the instructions of the nnU-Net Documentation (https://github.com/MIC-DKFZ/nnUNet). Having such a model would be great and then we could use this to help in annotation of the TotalSEgmentator dataset and then the TotalSegmentator could also do this.
That's great thanks @wasserth I'll look into training a model with some of our data and then we can take it from there.
Hi are there any plans to facilitate H&N segmentation using TotalSegmentator? If not, is it possible to train our own model using marked-up CT data and their corresponding RTSTRUCT files?