waynebhayes / SANA

Simulating Annealing Network Aligner
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Do you have this project in Matlab version? #100

Open johnwsq opened 4 years ago

johnwsq commented 4 years ago

Do you have this project in Matlab version? Thanks for your sharing!

waynebhayes commented 4 years ago

No. Matlab would be way too slow. However it may be possible to write a wrapper function in Matlab in order to call SANA.

-- Wayne Hayes, Ph.D. Associate Professor of Computer Science, University of California, Irvine Director, UCI-SDSU Joint Ph.D. Program in Computational Science (UCI side) A culture of legal fear is not what our founders had in mind when they created a free society. Law should support free choice, not impede choices all day long. Legal self-consciousness is slowly killing our society. - Philip K. Howard, Life without Lawyers https://www.amazon.com/Life-Without-Lawyers-Liberating-Americans/dp/0393065669; see also The Death of Common Sense https://www.amazon.com/Death-Common-Sense-Suffocating-America/dp/0812982746

On Mon, Nov 4, 2019 at 7:44 PM 王世强 notifications@github.com wrote:

Do you have this project in Matlab version? Thanks for your sharing!

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johnwsq commented 4 years ago

Thank for your reply. I want to ask you, which platform this code runs on, vscode or visual studio? Or other platforms. I ran the program according to the instructions. But,there was an error and I couldn't directly run it successfully. I have read your paper, and also want to learn the code. Thanks for your reply.

waynebhayes commented 4 years ago

It runs on any Unix/Linux platform. If you’re on Windtows, try installing Cygwin (cygwin.com)

— Wayne B. Hayes, Ph.D. Associate Professor of Computer Science, University of California, Irvine and Director (UCI side), UCI-SDSU Joint Program in Computational Science Sent from my iPad

On Nov 21, 2019, at 00:59, 王世强 notifications@github.com wrote:

 Thank for your reply. I want to ask you, which platform this code runs on, vscode or visual studio? Or other platforms. I ran the program according to the instructions. But,there was an error and I couldn't directly run it successfully. I have read your paper, and also want to learn the code. Thanks for your reply.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

johnwsq commented 4 years ago

I'm a little confused about your program. Can you give me a description (readme file) about how to run your program on linux platform please? Thanks a lot!

waynebhayes commented 4 years ago

Type "./sana -h" and see attached paper

On Thu, Nov 21, 2019 at 8:06 AM 王世强 notifications@github.com wrote:

I'm a little confused about your program. Can you give me a description (readme file) about how to run your program on linux platform please? Thanks a lot!

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/waynebhayes/SANA/issues/100?email_source=notifications&email_token=AE2SJDAVGI6LWRW4LXR4ODTQU2WEXA5CNFSM4JI5F6T2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEE2XG4I#issuecomment-557151089, or unsubscribe https://github.com/notifications/unsubscribe-auth/AE2SJDBVD6D3RWX2KWY3OOTQU2WEXANCNFSM4JI5F6TQ .

-- Wayne Hayes, Ph.D. Associate Professor of Computer Science, University of California, Irvine Director, UCI-SDSU Joint Ph.D. Program in Computational Science (UCI side) A culture of legal fear is not what our founders had in mind when they created a free society. Law should support free choice, not impede choices all day long. Legal self-consciousness is slowly killing our society. - Philip K. Howard, Life without Lawyers https://www.amazon.com/Life-Without-Lawyers-Liberating-Americans/dp/0393065669; see also The Death of Common Sense https://www.amazon.com/Death-Common-Sense-Suffocating-America/dp/0812982746