Remove fileToStrings calls from ExternalSimMatrix and add helper for decompressing files

waynebhayes / SANA

Simulating Annealing Network Aligner

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Remove fileToStrings calls from ExternalSimMatrix and add helper for decompressing files #65

Closed brfrs closed 5 years ago

brfrs commented 5 years ago

Replaced calls of "fileToStrings" from ExternalSimMatrix initMatrix with code to parse the file. Created helper function for decompressing files. Added a little more error checking for ExternalSimMatrix than was previously implemented.

Here are the massif.out files for running SANA on MMusculus18 and HSapiens18: before, after.