Prior to this pull request, SANA would create a folder in networks with the names of networks being aligned and but autogenerated binary matrices in there. Now, all the autogenerated files are put in the autogenerated folder in the root of the project. The autogenerated folder makes subdirectories named matrices, and serialized, as well as subdirectories for objective functions (namely gdv). However, I'm not sure how this can be tested with multipairwise mode - I changed the paths used in multipairwise.sh and the places where shadow networks are created to reflect the new locations serialized graphs are stored.
waynebhayes
commented
5 years ago
Prior to this pull request, SANA would create a folder in
networkswith the names of networks being aligned and but autogenerated binary matrices in there. Now, all the autogenerated files are put in theautogeneratedfolder in the root of the project. The autogenerated folder makes subdirectories namedmatrices, andserialized, as well as subdirectories for objective functions (namely gdv). However, I'm not sure how this can be tested with multipairwise mode - I changed the paths used inmultipairwise.shand the places where shadow networks are created to reflect the new locations serialized graphs are stored.