Put newly formed data files into "SequencedData" folder

weecology / Metabarcoding

Repository for work on the diet partitioning study at Portal

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Put newly formed data files into "SequencedData" folder #9

Closed bleds22e closed 7 years ago

bleds22e commented 7 years ago

create SequencedData folder
create SequencedData/Insect folder and move insect data into there
create SequencedData/Plant folder
create trnL taxa link file
create trnL voucher file
create trnL fecal file
create ITS taxa link file (BLAST)
create ITS voucher file with both BLAST and noBLAST reads
create ITS fecal file with both BLAST and noBLAST reads
add an RStudio project for streamlining process

skmorgane commented 7 years ago

In trnL_data_prep.R, you added a setwd hard path. I a) don't think this is actually needed since you have a RStudio project and b) will keep me from being able to run the code as is. If all of our datafiles are being kept in the repo (or in a folder with a similar relative position to the repo folder) we can just use relative paths. Is there a reason that wasn't working for you?

skmorgane commented 7 years ago

I asked Ethan about making changes to a PR in a situation where later PRs depend on this PR. He turned green, said a lot of frightening words, used the phrase "if you do X, it might be ok". I finally got him to say that if the changes are minor and we think we can clean them up after all the PRs are merged that this is the "safest way" to deal with that. So I am going to go ahead and merge this PR and I will turn my previous comment into an issue so we can deal with that later.