issues
search
weka511
/
bioinformatics
Code inspired by Bioinformatics Algorithms: an Active Learning Approach.
GNU General Public License v3.0
115
stars
35
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
I don't think that pre and incr_pre are used in graphs.scc
#163
weka511
closed
2 months ago
1
I don't think the parameter 'list_visited' in graphs.dfs is actually used
#162
weka511
closed
2 months ago
0
Write test for ts in graphs.py
#161
weka511
closed
2 months ago
0
Write test for suff in graphs.py
#160
weka511
closed
2 months ago
0
Write test for sc in graphs.py
#159
weka511
closed
2 months ago
1
Write test for gs in graphs.py
#158
weka511
opened
2 months ago
1
2sat broken
#157
weka511
closed
2 months ago
0
Complete test coverage for graphs.py
#156
weka511
closed
2 months ago
1
Fix naming convention for reference tables
#155
weka511
closed
3 months ago
0
BA5K find_middle_edge(...) always find diagonal edge
#154
weka511
closed
3 months ago
0
Test for LOCA broken
#153
weka511
opened
3 months ago
0
Broken code: gaff, and possibly other problems that depend on san_kai
#152
weka511
closed
3 months ago
0
Broken test: BA5I Find a Highest-Scoring Overlap Alignment of Two Strings
#151
weka511
closed
3 months ago
0
Conditionally skip tests that are slow or non-deterministic
#150
weka511
closed
3 months ago
0
test_ba2f produces a runtime warning in mostProbable
#149
weka511
closed
3 months ago
0
Tidy up sequence.py with a view to understanding Gibbs sampling better
#148
weka511
closed
3 months ago
0
Failed import in assemble.py
#147
weka511
closed
5 months ago
0
Test ba5m in align.py broken
#146
weka511
opened
5 months ago
0
Runtime warning in sequence.py test_ba2d(self)
#145
weka511
closed
3 months ago
1
Need a method to run all unittests across all files
#144
weka511
closed
5 months ago
0
Redundant code in cycleSpectrum
#143
weka511
closed
6 months ago
0
Use scipy for binomial coefficients in place of hand coded functions
#142
weka511
closed
6 months ago
0
There are two different functions called linearSpectrum: can we rationalize?
#141
weka511
closed
6 months ago
0
Solve challenge problem: sequence Tyrocidine from supplied spectrum
#140
weka511
opened
6 months ago
0
Fix broken test_ba11b and BA11B.py
#139
weka511
closed
6 months ago
0
The logic of SmallParsimony isn't clear
#138
weka511
closed
3 months ago
3
Move BA7?.py to phylogeny
#137
weka511
closed
1 year ago
0
Redundant copy of SmallParsimony in phylogeny.py
#136
weka511
opened
1 year ago
0
test_ba7f fails sometimes
#135
weka511
opened
1 year ago
2
Document phylogeny.py and comply with PEP8
#134
weka511
closed
1 year ago
0
Rewrite qrtd.py in C++
#133
weka511
closed
1 year ago
1
We need a script to execute all unit tests
#132
weka511
closed
1 year ago
0
Consider replacing fasta.py with Biopython
#131
weka511
closed
3 months ago
1
Use BioPython to parse Newick format trees
#130
weka511
opened
1 year ago
0
test_cstr() broken in phylogeny.py
#129
weka511
closed
1 year ago
0
test_cset() broken in phylogeny.py
#128
weka511
closed
1 year ago
0
test_chbp() broken in phylogeny.py
#127
weka511
closed
1 year ago
0
test_alph() broken in phylogeny.py
#126
weka511
closed
1 year ago
0
Create tests for Phylogeny.py
#125
weka511
closed
1 year ago
0
test_ba2f takes forever
#124
weka511
closed
3 months ago
0
Move chapters 1-4 from rosalind.py to separate chapter files
#123
weka511
closed
1 year ago
1
Fix test_rear() in rosalind.py
#122
weka511
opened
1 year ago
0
Fix broken test: test_ba3i in rosalind.py
#121
weka511
closed
1 year ago
1
Class grph duplicated
#120
weka511
closed
1 year ago
0
Broken tests in rosalind.py
#119
weka511
closed
1 year ago
0
Refactor align.py to use numpy arrays
#118
weka511
closed
3 months ago
1
test_ba5c_rosalind is broken
#117
weka511
opened
1 year ago
1
BLOSUM62 resource warning
#116
weka511
closed
1 year ago
2
test_ba5f_rosalind and highest_scoring_local_alignment are very slow
#115
weka511
opened
1 year ago
0
Fix broken test_ba5d in align.py
#114
weka511
closed
1 year ago
2
Next