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wenweixiong / MARVEL

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cannot open file '/Users/seanwen/Documents/U2AF1_2019/Linker/rMATS/ASEvents/fromGTF.RI.txt': No such file or directory #44

Open Cp0728 opened 2 months ago

Cp0728 commented 2 months ago

df <- read.table(paste("D:\deskface\MARVEL\format_rmats\fromGTF.RI.txt", sep=""), sep="\t", header=TRUE, stringsAsFactors=FALSE)

Format BED file

RI_Coordinates.bed <- PrepareBedFile.RI(file=df) Error in file(file, "rt") : cannot open the connection In addition: Warning message: In file(file, "rt") : cannot open file '/Users/seanwen/Documents/U2AF1_2019/Linker/rMATS/ASEvents/fromGTF.RI.txt': No such file or directory

The above is my error, I used the example data to generate fromGTF.RI.txt, but the path is wrong when running, please ask if this is a bug

Cp0728 commented 2 months ago

In this function Script_PLATE_00_rMATS_06_CreateBedFile_RI. R, you added an absolute path that caused the run to be called automatically, I hope you can change that

Cp0728 commented 2 months ago

thanks