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widdowquinn
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pyani
Application and Python module for average nucleotide identity analyses of microbes.
http://widdowquinn.github.io/pyani/
MIT License
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Installation issues
#429
TommyH-Tran
opened
1 week ago
1
ZeroDivisionError: float division by zero
#428
ivaneskos
opened
2 weeks ago
2
Running --graphics after analysis
#427
artfet
opened
3 weeks ago
1
docs: add kiepczi as a contributor for code, design, and test
#426
allcontributors[bot]
closed
1 month ago
0
Issue 421: Fix alignment coverage >1.0 and aniM symmetrical behaviour
#425
kiepczi
closed
1 month ago
1
add `pyani dnadiff` subcommand
#424
kiepczi
opened
1 month ago
5
numpy: No module named 'version'
#423
ireneortega
closed
1 month ago
4
Add separate columns for subject and query alignment lengths in `--run_results`
#422
kiepczi
opened
2 months ago
23
Fix alignment coverage >1.0 and aniM symmetrical behaviour
#421
kiepczi
closed
4 weeks ago
8
Inquiry on Analysis Duration with ANIb and ANIm for Streptomyces Genomes
#420
ZiliaMR
closed
3 months ago
4
Pyani not installing through conda
#419
conmeehan
closed
3 months ago
5
ValueError in pyani plot using pyani 0.3.0-alpha
#418
jmoltzau
opened
11 months ago
0
Type strain vs X of genomes
#417
nikolomics
opened
11 months ago
1
ERROR: This has possibly been a NUCmer run failure, please investigate ERROR: NoneType: None
#416
Yuanzhou-W
opened
11 months ago
3
sending some love for this script: " genbank_get_genomes_by_taxon.py"
#415
peterthorpe5
closed
1 year ago
2
Error "Cannot update because the update target is missing these hooks" when trying to use autoupdate on my repo
#414
dmentock
closed
1 year ago
1
Cannot run anim in pyani 0.3.0-alpha using provided data, on macosx 12.6, nucmer fails.
#413
joneson
closed
1 year ago
4
`pyani` command not found
#412
friedsh2
closed
1 year ago
1
pyani command not found
#411
chjp
closed
1 year ago
1
Update `get_version()` tests based on discussion surrounding Issue #405
#410
baileythegreen
opened
1 year ago
1
Issue# 405: New test case for previously missed code in fastani
#409
baileythegreen
opened
1 year ago
0
Use of `unittest.TestCase` assertion methods provides more informative error messages than `assert`
#408
baileythegreen
closed
1 year ago
1
Issue# 405: New test case for previously missed code in `fastani`
#407
baileythegreen
closed
1 year ago
1
pyani: command not found
#406
Gahyeon-K
closed
1 year ago
1
Untested code in `fastani.py`
#405
baileythegreen
opened
1 year ago
1
Issue #402: Fix tests that fail as a result of running `pytest` with no flags
#404
baileythegreen
opened
1 year ago
2
Problem with EASY-INSTALL-ENTRY-SCRIPT for miniconda
#403
baileythegreen
closed
1 year ago
1
`test_cli_parsing()` tests fail when `pytest` is run with no flags
#402
baileythegreen
opened
1 year ago
1
Add contributors
#401
baileythegreen
closed
1 year ago
1
Updating `Contributors.md`
#400
baileythegreen
closed
1 year ago
3
docs: add zakisaati as a contributor for bug
#399
allcontributors[bot]
closed
1 year ago
0
Relocate info about `fastANI` + Python ≥3.9 + macOS
#398
baileythegreen
opened
2 years ago
1
Bug in CircleCI tests for python 3.6: caching issue
#397
baileythegreen
closed
2 years ago
4
Update v2 distribution on PyPI (and bioconda)
#396
baileythegreen
closed
1 year ago
8
How do I provide a labels.txt or classes.txt file?
#394
widdowquinn
closed
1 year ago
3
ERROR: This has possibly been a NUCmer run failure, please investigate > ERROR: NoneType: None
#393
neelam19051
closed
1 year ago
4
Rationalise documentation
#392
widdowquinn
opened
2 years ago
2
Update CircleCI config and related files
#391
widdowquinn
closed
2 years ago
1
Issue 389
#390
widdowquinn
closed
2 years ago
2
`pyani createdb` fails is databse is not present
#389
widdowquinn
closed
2 years ago
1
Can't reference `run_id` if the run fails
#388
baileythegreen
closed
2 years ago
0
Issue #378: Add `alembic` support for database migrations
#387
baileythegreen
opened
2 years ago
3
Which coordinate in the percentage heat map drawn by pyaini is used as a reference
#386
Reynababy
closed
2 years ago
5
Add `try/except` around extraction to accommodate failing uncompression in `pyani download`
#385
baileythegreen
opened
2 years ago
3
Move `fastANI` to a separate `requirements`
#384
baileythegreen
closed
2 years ago
2
`pyani download` is blocked if downloaded file cannot be uncompressed.
#383
widdowquinn
closed
2 years ago
6
Report `fastANI` version in `pyani listdeps` output
#380
baileythegreen
closed
2 years ago
1
`fastANI` is not listed in the output of `listdeps`
#379
baileythegreen
closed
2 years ago
0
Use `alembic` to manage SQLite schema changes?
#378
widdowquinn
opened
2 years ago
41
`fastani` is not installed under Python 3.9
#377
widdowquinn
closed
2 years ago
3
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