A completely automated MATLAB-based trainable image cell segmentation, fluorescence quantification and analysis suite, particularly well suited for high-throughput time lapse fluorescence microscopy of in vivo bacterial cells.
I wonder if there is a way to use data that has been loaded in Matlab from ND2 files using the Bioformats tool. That way SuperSegger can start the analysis directly without having to split the ND2 tiff files in .tif format in Fiji and rename them. This would be extremely useful for us to write automatic pipelines to process the data all within Matlab
Great tool!
thanks in advance,
I wonder if there is a way to use data that has been loaded in Matlab from ND2 files using the Bioformats tool. That way SuperSegger can start the analysis directly without having to split the ND2 tiff files in .tif format in Fiji and rename them. This would be extremely useful for us to write automatic pipelines to process the data all within Matlab Great tool! thanks in advance,
Andres.