willpearse / pez

Phylogenetics for the Environmental Sciences
GNU General Public License v3.0
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Make wrappers for Tucker et al. (2016) #61

Open willpearse opened 8 years ago

willpearse commented 8 years ago

The main ones:

...with some debate about whether to put in the sub-categories (as switches?):

This will also mean you need to add VPD (Variance in Phylogenetic Distance) as a metric. Have a quick think about the SES for that, which I sense might not be trivial...

cmtucker commented 8 years ago

Wow, you are fast! Thanks for adding some of this in!

VPD is easy to code (e.g. var(dis[lower.tri(dis)]); weighted var for VPDab). SES I have not considered at all, and might need to think on for a bit.

...with some debate about whether to put in the sub-categories (as switches?):

� branch lengths � pairwise distances � nearest � ...etc� I could go either way on this. It�s probably not necessary, but if its easy, maybe.

Let me know if I can do anything to help.

C

On Jan 15, 2016, at 1:09 PM, Will Pearse notifications@github.com wrote:

The main ones:

� richness � divergence � regularity ...with some debate about whether to put in the sub-categories (as switches?):

� branch lengths � pairwise distances � nearest � ...etc... This will also mean you need to add VPD (Variance in Phylogenetic Distance) as a metric. Have a quick think about the SES for that, which I sense might not be trivial...

� Reply to this email directly or view it on GitHub.

willpearse commented 8 years ago

...well, call me fast when I've written the code :D

I don't think the subsets would be hard, so I might do it anyway with the default being to just whack everything out!

willpearse commented 8 years ago

...and add PSC, Will, which I can't believe you've left out!