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wososa / PSI-Sigma

PSI-Sigma
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Filtered Results #11

Closed ashokpatowary closed 4 years ago

ashokpatowary commented 4 years ago

Hi @wososa

Thanks for the wonderful tools as there are very which has been created/tested for long read. I am trying to use PSi-Signa for my long read data. I am having a query about the filtered results. I have run the tool on a small dataset. In the filtered data I can see only 5 events. But in the unfiltered events, if try to see events with T-test p-value < 0.01; I can see 19 events. Also the events are named differently in the unfiltered file. How can I correlates the events? Also I am wondering how the filtered file was generated?

Thanks

wososa commented 4 years ago

Hi @ashokpatowary

Thanks for trying PSI-Sigma. The filtered data also exclude data with < 0.75 sample size. For example, if the control group has 3 samples and only 1 sample has sufficient amount of reads, this event will be excluded in "--fmode 0". You can try "--fmode 3" to show all unfiltered data in .sorted.txt file. Also, if you type "perl dummyai.pl --help", you will see all the other parameters. Please let me know if you have any further questions.

Thanks, Woody

ashokpatowary commented 4 years ago

@wososa Thanks