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wtsi-npg / perl-irods-wrap

Perl iRODS Client Wrapper Library
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Test failure in collection listing with baton 4.3.1 #319

Open kjsanger opened 6 months ago

kjsanger commented 6 months ago 
#   Failed test 'collection_checksums died (The returned path spec did not have a "contents" key: {"collection":"/testZone/home/irods/iRODSTest.48815.10/irods","error":{"code":-317000,"message":"Failed to get the checksum of '/testZone/home/irods/iRODSTest.48815.10/irods' as it is not a data object"}} at inline delegation in WTSI::NPG::iRODS::Communicator for logger->logconfess (attribute declared in /home/runner/perl5npg/lib/perl5/WTSI/DNAP/Utilities/Loggable.pm at line 28) line 18.
#   WTSI::NPG::iRODS::Communicator::logconfess(WTSI::NPG::iRODS::BatonClient=HASH(0x559d88311b80), "The returned path spec did not have ", "a \"contents\" key: ", "{\"collection\":\"/testZone/home/irods/iRODSTest.48815.10/irods\""...) called at /home/runner/work/perl-irods-wrap/perl-irods-wrap/blib/lib/WTSI/NPG/iRODS/BatonClient.pm line 931
#   WTSI::NPG::iRODS::BatonClient::_list_collection(WTSI::NPG::iRODS::BatonClient=HASH(0x559d88311b80), "/testZone/home/irods/iRODSTest.48815.10/irods", HASH(0x559d88319460)) called at /home/runner/work/perl-irods-wrap/perl-irods-wrap/blib/lib/WTSI/NPG/iRODS/BatonClient.pm line 252
#   WTSI::NPG::iRODS::BatonClient::list_collection_checksums(WTSI::NPG::iRODS::BatonClient=HASH(0x559d88311b80), "/testZone/home/irods/iRODSTest.48815.10/irods", undef) called at /home/runner/work/perl-irods-wrap/perl-irods-wrap/blib/lib/WTSI/NPG/iRODS.pm line 2133
#   WTSI::NPG::iRODS::collection_checksums(WTSI::NPG::iRODS=HASH(0x559d88312438), "/testZone/home/irods/iRODSTest.48815.10/irods") called at t/lib/WTSI/NPG/iRODSTest.pm line 552
#   WTSI::NPG::iRODSTest::collection_checksums(WTSI::NPG::iRODSTest=HASH(0x559d8829e758)) called at /home/runner/perl5/lib/perl5/Test/Class.pm line 293
#   Test::Class::try {...} () called at /home/runner/perl5/lib/perl5/Try/Tiny.pm line 100
#   eval {...} called at /home/runner/perl5/lib/perl5/Try/Tiny.pm line 93
#   Try::Tiny::try(CODE(0x559d882e2df8), Try::Tiny::Catch=REF(0x559d883078d0)) called at /home/runner/perl5/lib/perl5/Test/Class.pm line 293
#   Test::Class::_run_method(WTSI::NPG::iRODSTest=HASH(0x559d8829e758), "collection_checksums", ARRAY(0x559d85b008d8)) called at /home/runner/perl5/lib/perl5/Test/Class.pm line 402
#   Test::Class::runtests("WTSI::NPG::iRODSTest") called at t/lib/WTSI/NPG/iRODS/Test.pm line 26
#   WTSI::NPG::iRODS::Test::runtests("WTSI::NPG::iRODSTest") called at t/irods.t line 7)'
#   at t/lib/WTSI/NPG/iRODS/Test.pm line 26.
#   (in WTSI::NPG::iRODSTest->collection_checksums)

#   Failed test '(WTSI::NPG::iRODSTest::collection_checksums returned before plan complete)'
#   at t/lib/WTSI/NPG/iRODS/Test.pm line 26.
#   (in WTSI::NPG::iRODSTest->collection_checksums)

#   Failed test '(WTSI::NPG::iRODSTest::collection_checksums returned before plan complete)'
#   at t/lib/WTSI/NPG/iRODS/Test.pm line 26.
#   (in WTSI::NPG::iRODSTest->collection_checksums)
# Looks like you failed 3 tests of 316.
t/irods.t .................. 
Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/316 subtests 
    (less 5 skipped subtests: 308 okay)

#   Failed test 'get_contents died (The returned path spec did not have a "contents" key: {"collection":"/testZone/home/irods/CollectionTest.169366.5/path/test_dir/contents","error":{"message":"Failed to get the checksum of '/testZone/home/irods/CollectionTest.169366.5/path/test_dir/contents' as it is not a data object","code":-317000}} at inline delegation in WTSI::NPG::iRODS::Communicator for logger->logconfess (attribute declared in /home/runner/perl5npg/lib/perl5/WTSI/DNAP/Utilities/Loggable.pm at line 28) line 18.
#   WTSI::NPG::iRODS::Communicator::logconfess(WTSI::NPG::iRODS::BatonClient=HASH(0x55be9a0f3f08), "The returned path spec did not have ", "a \"contents\" key: ", "{\"collection\":\"/testZone/home/irods/CollectionTest.169366.5/p"...) called at /home/runner/work/perl-irods-wrap/perl-irods-wrap/blib/lib/WTSI/NPG/iRODS/BatonClient.pm line 931
#   WTSI::NPG::iRODS::BatonClient::_list_collection(WTSI::NPG::iRODS::BatonClient=HASH(0x55be9a0f3f08), "/testZone/home/irods/CollectionTest.169366.5/path/test_dir/co"..., HASH(0x55be9a1b7a88)) called at /home/runner/work/perl-irods-wrap/perl-irods-wrap/blib/lib/WTSI/NPG/iRODS/BatonClient.pm line 959
#   WTSI::NPG::iRODS::BatonClient::_list_collection_recur(WTSI::NPG::iRODS::BatonClient=HASH(0x55be9a0f3f08), "/testZone/home/irods/CollectionTest.169366.5/path/test_dir/co"..., HASH(0x55be9a1b7a88)) called at /home/runner/work/perl-irods-wrap/perl-irods-wrap/blib/lib/WTSI/NPG/iRODS/BatonClient.pm line 247
#   WTSI::NPG::iRODS::BatonClient::list_collection_checksums(WTSI::NPG::iRODS::BatonClient=HASH(0x55be9a0f3f08), "/testZone/home/irods/CollectionTest.169366.5/path/test_dir/co"..., "RECURSE") called at /home/runner/work/perl-irods-wrap/perl-irods-wrap/blib/lib/WTSI/NPG/iRODS.pm line 2133
#   WTSI::NPG::iRODS::collection_checksums(WTSI::NPG::iRODS=HASH(0x55be9a19da00), "/testZone/home/irods/CollectionTest.169366.5/path/test_dir/co"..., "RECURSE") called at /home/runner/work/perl-irods-wrap/perl-irods-wrap/blib/lib/WTSI/NPG/iRODS/Collection.pm line 186
#   WTSI::NPG::iRODS::Collection::get_contents(WTSI::NPG::iRODS::Collection=HASH(0x55be9a18b428), "RECURSE", "CHECKSUM") called at t/lib/WTSI/NPG/iRODS/CollectionTest.pm line 296
#   WTSI::NPG::iRODS::CollectionTest::get_contents(WTSI::NPG::iRODS::CollectionTest=HASH(0x55be9a175fe0)) called at /home/runner/perl5/lib/perl5/Test/Class.pm line 293
#   Test::Class::try {...} () called at /home/runner/perl5/lib/perl5/Try/Tiny.pm line 100
#   eval {...} called at /home/runner/perl5/lib/perl5/Try/Tiny.pm line 93
#   Try::Tiny::try(CODE(0x55be9a1f8350), Try::Tiny::Catch=REF(0x55be9a19cf68)) called at /home/runner/perl5/lib/perl5/Test/Class.pm line 293
#   Test::Class::_run_method(WTSI::NPG::iRODS::CollectionTest=HASH(0x55be9a175fe0), "get_contents", ARRAY(0x55be97a04988)) called at /home/runner/perl5/lib/perl5/Test/Class.pm line 402
#   Test::Class::runtests("WTSI::NPG::iRODS::CollectionTest") called at t/lib/WTSI/NPG/iRODS/Test.pm line 26
#   WTSI::NPG::iRODS::Test::runtests("WTSI::NPG::iRODS::CollectionTest") called at t/irods_collection_test.t line 7)'
#   at t/lib/WTSI/NPG/iRODS/Test.pm line 26.
#   (in WTSI::NPG::iRODS::CollectionTest->get_contents)

#   Failed test '(WTSI::NPG::iRODS::CollectionTest::get_contents returned before plan complete)'
#   at t/lib/WTSI/NPG/iRODS/Test.pm line 26.
#   (in WTSI::NPG::iRODS::CollectionTest->get_contents)

#   Failed test '(WTSI::NPG::iRODS::CollectionTest::get_contents returned before plan complete)'
#   at t/lib/WTSI/NPG/iRODS/Test.pm line 26.
#   (in WTSI::NPG::iRODS::CollectionTest->get_contents)
# Looks like you failed 3 tests of 59.
t/irods_collection_test.t .. 
Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/59 subtests 
    (less 6 skipped subtests: 50 okay)

Possibly related to the fact that baton now prints the checksum attribute when requested and no checksum is defined in iRODS.

jmtcsngr commented 5 months ago

We could update compatibility matrix in readme if modern baton is required for latest versions.