wustl-oncology / cloud-workflows

Infrastructure and tooling required to get genomic workflows running in the cloud
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cloudize-workflow.py should fail if it encounters an invalid file path or access issue #21

Closed malachig closed 2 years ago

malachig commented 2 years ago

Currently if the cloudize script encounters a file path in the input "local" YAML, and it can not access that file, it just silently skips over it, prints out an unmodified YAML record for that line, and declares victory.

We probably want it to instead check whether file paths are valid and error out or at least warn.