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wwood
/
galah
More scalable dereplication for metagenome assembled genomes
GNU General Public License v3.0
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Update README.md and man
#46
solc42
closed
2 months ago
3
Allow contig clustering
#45
AroneyS
opened
5 months ago
0
error: unexpected argument '-d' found
#44
xvazquezc
closed
6 months ago
2
build(deps): update disjoint requirement from 0.6.* to 0.7.*
#43
dependabot[bot]
opened
8 months ago
0
build(deps): update env_logger requirement from 0.10.* to 0.11.*
#42
dependabot[bot]
opened
9 months ago
0
Add citations and release
#41
AroneyS
closed
10 months ago
0
Switch genome name lookup to hashmap
#40
AroneyS
opened
11 months ago
2
Fix skani shuffle
#39
AroneyS
closed
11 months ago
3
Fix log message
#38
AroneyS
closed
12 months ago
0
Skani preclusterer speed-up
#37
AroneyS
closed
12 months ago
6
skani is not parallelized in `galah cluster`
#36
apcamargo
closed
1 year ago
2
Implement skani preclusterer
#35
AroneyS
closed
1 year ago
2
Refactor clusterer choice
#34
wwood
closed
1 year ago
4
Refactor clusterer choice
#33
AroneyS
closed
1 year ago
0
Finch running time
#32
AroneyS
closed
1 year ago
1
unnecessary fastani check
#31
wwood
opened
1 year ago
0
Implement skani as fastani alternative
#30
AroneyS
closed
1 year ago
7
Failed to find sufficient version of dashing
#29
michoug
opened
1 year ago
1
checkM table not working
#28
Sanrrone
closed
1 year ago
1
add bindash support instead of dashing
#27
jianshu93
opened
1 year ago
1
Compilation error
#26
Rridley7
opened
1 year ago
2
build(deps): update finch requirement from 0.3.* to 0.5.*
#25
dependabot[bot]
closed
1 year ago
2
build(deps): update env_logger requirement from 0.9.* to 0.10.*
#24
dependabot[bot]
closed
1 year ago
2
Wrong genome annotation
#23
SilasK
opened
2 years ago
0
Low quality genomes end up as seperate species.
#22
SilasK
opened
2 years ago
0
Intermediate output
#21
SilasK
opened
2 years ago
0
build(deps): update clap requirement from 3.* to 4.*
#20
dependabot[bot]
closed
1 year ago
2
Dashing failed
#19
SilasK
opened
2 years ago
1
If input genomes are short, they don't cluster
#18
wwood
opened
2 years ago
0
Regarding galah output
#17
ShailNair
opened
2 years ago
6
dashing2 instead of dashing1
#16
jianshu93
opened
2 years ago
0
build(deps): update clap requirement from 2.* to 3.*
#15
dependabot[bot]
closed
2 years ago
1
sketches in pre-cluster for a little bit distant related genomes
#14
jianshu93
opened
2 years ago
4
--min-aligned-fraction, as fraction?
#13
aistBMRG
opened
2 years ago
0
build(deps): update env_logger requirement from 0.8.* to 0.9.*
#12
dependabot[bot]
closed
2 years ago
1
build(deps): update finch requirement from 0.3.* to 0.4.*
#11
dependabot[bot]
closed
1 year ago
1
adding logo
#10
rhysnewell
closed
3 years ago
1
Dereplicate MAGs on strain level
#9
alienzj
closed
3 years ago
2
Fix argument parsing for '--precluster-ani'
#8
apcamargo
closed
4 years ago
2
Galah not clustering MAGs with ANI greater than the threshold
#7
apcamargo
closed
4 years ago
3
Update fastANI requirement to 1.31
#6
apcamargo
closed
4 years ago
1
Question about clustering mechanism
#5
MrOlm
closed
4 years ago
3
Fix typo
#4
apcamargo
closed
4 years ago
1
Option to save cluster representative
#3
apcamargo
closed
4 years ago
5
Fix typo
#2
apcamargo
closed
4 years ago
1
[Question] MAG quality score
#1
apcamargo
closed
4 years ago
8