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wwood / galah

More scalable dereplication for metagenome assembled genomes
GNU General Public License v3.0
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Finch running time #32

Closed AroneyS closed 1 year ago

AroneyS commented 1 year ago

Most of the time spent when clustering with finch+fastani or finch+skani is in this loop: https://github.com/wwood/galah/blob/31a6edd14e3417ba4cb69744fb8402f1e414a23a/src/finch.rs#L49

It looks to be single-threaded. Anyway we can parallelise it?

AroneyS commented 1 year ago

I was wrong. Was only single threaded at first...