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wzthu / enrichTF

Bioconductor package enrichTF: Transcription Factors Enrichment Analysis
https://www.bioconductor.org/packages/release/bioc/html/enrichTF.html
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error for hg19 Genome #10

Open weizhousjtu opened 4 years ago

weizhousjtu commented 4 years ago

I got an error when using —— setGenome("hg19") ： Configure bsgenome ... Configure bsgenome finished Configure motifpwm ... Configure motifpwm finished Configure motifPWMOBJ ... Configure motifPWMOBJ finished Configure RE_gene_corr ... Configure RE_gene_corr finished Configure Enhancer_RE_gene_corr ... Configure Enhancer_RE_gene_corr finished Configure MotifTFTable ... Configure MotifTFTable finished Configure MotifWeights ... Configure MotifWeights finished Configure TFgeneRelMtx ... Configure TFgeneRelMtx finished Configure SampleName ... Configure SampleName finished Configure OpenRegion ... Configure OpenRegion finished Configure ConserveRegion ... Configure ConserveRegion finished Configure HOMER ... Error in runWithFinishCheck(func = checkAndInstallHOMER, "HOMER", refFilePath = "HOMER") : file.exists(refFilePath) is not TRUE Any suggestions?

R version 3.6.1 (2019-07-05) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 18362)

wzthu commented 4 years ago

There are some bugs here on Windows. We are fixing this bug now. Please run it on Linux instead.

AlexBlais74 commented 4 years ago

Hi I am having the same issue, running on Windows. Would there be a workaround to get this to work without HOMER? Thanks Alex

w2felix commented 3 years ago

Hi, I'd also like to run it on windows... would there be any possibility?