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xinehc / args_oap

ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
MIT License
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How to use v2.37 with single end reads? #1

Closed JX-Zhong closed 2 years ago

JX-Zhong commented 2 years ago

Hi I'm trying to use ARGs_OAP with my single end reads, but it still reminds me that R1 R2 file was necessary for performing. But I saw the newest version was able to treat single end reads.

xinehc commented 2 years ago

The current version of args_oap does not support single-end reads, we hope to remove this constraint in future updates.

As a workaround, you could generate some fake R2 files (empty *_2.fa) to make args_oap running.

Hope this helps, Xi