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xjtu-omics / SVision

Detecting genome structural variants with deep learning in single molecule sequencing
GNU General Public License v3.0
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Multi-sample option #10

Closed YahGao closed 2 years ago

YahGao commented 2 years ago

Hello.

We have generated several PacBio data. As I understand it, SVision calls SV for each sample. Can it process multiple samples together? My current idea is to call SV sample by sample and then merge them with SURVIVOR or Jasmine.

Thanks, Yahui

jiadong324 commented 2 years ago

Hi,

Thanks for your interest in our tool.

You are correct. For cohort studies, you might need to detect sample by sample, and merge the results.

YahGao commented 2 years ago

Thanks for your reply